Experiment: ALP with Bacitracin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1240 and Dsui_1241 are separated by 13 nucleotides Dsui_1241 and Dsui_1242 overlap by 4 nucleotides Dsui_1242 and Dsui_1243 are separated by 28 nucleotides
Dsui_1240: Dsui_1240 - dihydrofolate reductase, at 1,299,101 to 1,299,634
_1240
Dsui_1241: Dsui_1241 - hypothetical protein, at 1,299,648 to 1,300,391
_1241
Dsui_1242: Dsui_1242 - hypothetical protein, at 1,300,388 to 1,302,562
_1242
Dsui_1243: Dsui_1243 - hypothetical protein, at 1,302,591 to 1,303,937
_1243
Position (kb)
1300
1301
1302
1303 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1300.003 kb on + strand at 1300.003 kb on + strand at 1300.015 kb on + strand at 1300.096 kb on - strand, within Dsui_1241 at 1300.123 kb on + strand, within Dsui_1241 at 1300.181 kb on - strand at 1300.552 kb on - strand at 1300.563 kb on + strand at 1300.615 kb on + strand, within Dsui_1242 at 1300.649 kb on - strand, within Dsui_1242 at 1300.658 kb on + strand at 1300.785 kb on + strand at 1300.956 kb on + strand, within Dsui_1242 at 1300.968 kb on + strand, within Dsui_1242 at 1300.968 kb on + strand, within Dsui_1242 at 1300.968 kb on + strand at 1301.097 kb on - strand, within Dsui_1242 at 1301.127 kb on - strand, within Dsui_1242 at 1301.180 kb on + strand at 1301.273 kb on + strand at 1301.282 kb on + strand at 1301.297 kb on + strand at 1301.418 kb on - strand at 1301.469 kb on + strand, within Dsui_1242 at 1301.798 kb on + strand at 1301.806 kb on - strand, within Dsui_1242 at 1301.821 kb on + strand at 1301.844 kb on - strand, within Dsui_1242 at 1301.890 kb on - strand at 1301.900 kb on - strand at 1301.934 kb on - strand, within Dsui_1242 at 1301.934 kb on - strand at 1302.039 kb on + strand at 1302.047 kb on - strand, within Dsui_1242 at 1302.097 kb on - strand, within Dsui_1242 at 1302.195 kb on + strand at 1302.292 kb on + strand at 1302.348 kb on + strand at 1302.407 kb on - strand at 1302.435 kb on - strand at 1302.552 kb on - strand at 1302.637 kb on - strand at 1302.663 kb on + strand at 1302.934 kb on - strand, within Dsui_1243 at 1303.104 kb on - strand, within Dsui_1243 at 1303.109 kb on - strand, within Dsui_1243 at 1303.109 kb on - strand, within Dsui_1243 at 1303.111 kb on + strand, within Dsui_1243 at 1303.119 kb on - strand, within Dsui_1243 at 1303.119 kb on - strand, within Dsui_1243 at 1303.192 kb on + strand at 1303.200 kb on - strand, within Dsui_1243 at 1303.230 kb on + strand, within Dsui_1243 at 1303.335 kb on - strand, within Dsui_1243 at 1303.376 kb on + strand, within Dsui_1243 at 1303.411 kb on + strand at 1303.543 kb on - strand, within Dsui_1243
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Bacitracin 0.2 mg/ml remove 1,300,003 + +0.0 1,300,003 + -1.0 1,300,015 + -1.5 1,300,096 - Dsui_1241 0.60 +0.0 1,300,123 + Dsui_1241 0.64 -1.0 1,300,181 - +0.0 1,300,552 - -1.5 1,300,563 + +0.0 1,300,615 + Dsui_1242 0.10 -2.5 1,300,649 - Dsui_1242 0.12 -2.0 1,300,658 + +0.0 1,300,785 + +0.0 1,300,956 + Dsui_1242 0.26 -2.8 1,300,968 + Dsui_1242 0.27 -1.5 1,300,968 + Dsui_1242 0.27 -2.5 1,300,968 + -1.0 1,301,097 - Dsui_1242 0.33 -2.0 1,301,127 - Dsui_1242 0.34 -2.5 1,301,180 + +0.0 1,301,273 + -1.0 1,301,282 + -1.0 1,301,297 + +0.0 1,301,418 - +0.0 1,301,469 + Dsui_1242 0.50 -2.5 1,301,798 + -1.5 1,301,806 - Dsui_1242 0.65 -2.0 1,301,821 + -1.0 1,301,844 - Dsui_1242 0.67 -1.0 1,301,890 - -1.0 1,301,900 - +0.0 1,301,934 - Dsui_1242 0.71 -2.0 1,301,934 - -1.0 1,302,039 + -1.0 1,302,047 - Dsui_1242 0.76 -2.5 1,302,097 - Dsui_1242 0.79 -1.0 1,302,195 + -2.0 1,302,292 + +0.0 1,302,348 + +0.0 1,302,407 - -1.8 1,302,435 - -2.3 1,302,552 - -0.5 1,302,637 - -0.1 1,302,663 + -2.8 1,302,934 - Dsui_1243 0.25 -0.2 1,303,104 - Dsui_1243 0.38 -0.8 1,303,109 - Dsui_1243 0.38 -0.6 1,303,109 - Dsui_1243 0.38 -1.4 1,303,111 + Dsui_1243 0.39 +0.0 1,303,119 - Dsui_1243 0.39 -1.2 1,303,119 - Dsui_1243 0.39 +0.3 1,303,192 + +0.0 1,303,200 - Dsui_1243 0.45 -1.7 1,303,230 + Dsui_1243 0.47 -1.5 1,303,335 - Dsui_1243 0.55 -1.1 1,303,376 + Dsui_1243 0.58 +0.0 1,303,411 + +0.0 1,303,543 - Dsui_1243 0.71 -0.7
Or see this region's nucleotide sequence