Experiment: ALP with Bacitracin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1116 and Dsui_1117 are separated by 78 nucleotides Dsui_1117 and Dsui_1118 are separated by 123 nucleotides Dsui_1118 and Dsui_1119 are separated by 47 nucleotides Dsui_1119 and Dsui_1120 overlap by 4 nucleotides
Dsui_1116: Dsui_1116 - methyl-accepting chemotaxis protein, at 1,163,824 to 1,165,431
_1116
Dsui_1117: Dsui_1117 - hemerythrin-like metal-binding domain-containing protein, at 1,165,510 to 1,165,926
_1117
Dsui_1118: Dsui_1118 - putative permease, at 1,166,050 to 1,166,946
_1118
Dsui_1119: Dsui_1119 - glutathione peroxidase, at 1,166,994 to 1,167,482
_1119
Dsui_1120: Dsui_1120 - uncharacterized protein SCO1/SenC/PrrC, at 1,167,479 to 1,168,063
_1120
Position (kb)
1166
1167 Strain fitness (log2 ratio)
-2
-1
0
1 at 1165.137 kb on + strand, within Dsui_1116 at 1165.188 kb on + strand, within Dsui_1116 at 1165.275 kb on + strand at 1165.709 kb on + strand, within Dsui_1117 at 1165.736 kb on + strand at 1165.817 kb on - strand, within Dsui_1117 at 1165.817 kb on - strand, within Dsui_1117 at 1165.969 kb on - strand at 1166.010 kb on + strand at 1166.018 kb on - strand at 1166.062 kb on + strand at 1166.183 kb on - strand, within Dsui_1118 at 1166.193 kb on - strand, within Dsui_1118 at 1166.212 kb on + strand, within Dsui_1118 at 1166.261 kb on + strand, within Dsui_1118 at 1166.278 kb on + strand, within Dsui_1118 at 1166.286 kb on - strand, within Dsui_1118 at 1166.345 kb on - strand, within Dsui_1118 at 1166.524 kb on + strand, within Dsui_1118 at 1166.532 kb on - strand, within Dsui_1118 at 1166.532 kb on - strand, within Dsui_1118 at 1166.532 kb on - strand, within Dsui_1118 at 1166.543 kb on + strand, within Dsui_1118 at 1166.832 kb on + strand, within Dsui_1118 at 1166.832 kb on + strand, within Dsui_1118 at 1166.840 kb on - strand, within Dsui_1118 at 1166.977 kb on + strand at 1167.168 kb on + strand, within Dsui_1119 at 1167.325 kb on + strand, within Dsui_1119 at 1167.327 kb on - strand, within Dsui_1119 at 1167.408 kb on - strand, within Dsui_1119 at 1167.493 kb on + strand at 1167.508 kb on + strand at 1167.731 kb on + strand, within Dsui_1120 at 1167.732 kb on + strand, within Dsui_1120 at 1167.795 kb on + strand, within Dsui_1120 at 1167.855 kb on - strand, within Dsui_1120 at 1167.931 kb on + strand, within Dsui_1120 at 1167.939 kb on - strand, within Dsui_1120
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Bacitracin 0.2 mg/ml remove 1,165,137 + Dsui_1116 0.82 -0.0 1,165,188 + Dsui_1116 0.85 -0.0 1,165,275 + +0.1 1,165,709 + Dsui_1117 0.48 -0.1 1,165,736 + +0.0 1,165,817 - Dsui_1117 0.74 -0.5 1,165,817 - Dsui_1117 0.74 +0.0 1,165,969 - -1.0 1,166,010 + -1.0 1,166,018 - -2.5 1,166,062 + -0.0 1,166,183 - Dsui_1118 0.15 -1.5 1,166,193 - Dsui_1118 0.16 +0.0 1,166,212 + Dsui_1118 0.18 -0.3 1,166,261 + Dsui_1118 0.24 -0.2 1,166,278 + Dsui_1118 0.25 -0.2 1,166,286 - Dsui_1118 0.26 -1.0 1,166,345 - Dsui_1118 0.33 -2.3 1,166,524 + Dsui_1118 0.53 -0.4 1,166,532 - Dsui_1118 0.54 +0.0 1,166,532 - Dsui_1118 0.54 +0.0 1,166,532 - Dsui_1118 0.54 +0.0 1,166,543 + Dsui_1118 0.55 +0.7 1,166,832 + Dsui_1118 0.87 -0.5 1,166,832 + Dsui_1118 0.87 -0.5 1,166,840 - Dsui_1118 0.88 +0.0 1,166,977 + -0.7 1,167,168 + Dsui_1119 0.36 -0.6 1,167,325 + Dsui_1119 0.68 -0.8 1,167,327 - Dsui_1119 0.68 +0.0 1,167,408 - Dsui_1119 0.85 -1.0 1,167,493 + -0.9 1,167,508 + -0.4 1,167,731 + Dsui_1120 0.43 -0.1 1,167,732 + Dsui_1120 0.43 -0.2 1,167,795 + Dsui_1120 0.54 -0.5 1,167,855 - Dsui_1120 0.64 +0.0 1,167,931 + Dsui_1120 0.77 -0.7 1,167,939 - Dsui_1120 0.79 -2.0
Or see this region's nucleotide sequence