Experiment: ALP with Bacitracin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0894 and Dsui_0895 are separated by 83 nucleotides Dsui_0895 and Dsui_0896 are separated by 18 nucleotides
Dsui_0894: Dsui_0894 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 908,275 to 910,899
_0894
Dsui_0895: Dsui_0895 - nitrogen regulatory protein PII, at 910,983 to 911,321
_0895
Dsui_0896: Dsui_0896 - heavy metal efflux pump, cobalt-zinc-cadmium, at 911,340 to 914,450
_0896
Position (kb)
910
911
912 Strain fitness (log2 ratio)
-2
-1
0
1 at 910.037 kb on + strand at 910.046 kb on - strand, within Dsui_0894 at 910.053 kb on + strand, within Dsui_0894 at 910.129 kb on + strand at 910.171 kb on + strand, within Dsui_0894 at 910.179 kb on - strand, within Dsui_0894 at 910.184 kb on + strand, within Dsui_0894 at 910.235 kb on - strand at 910.287 kb on + strand, within Dsui_0894 at 910.287 kb on + strand, within Dsui_0894 at 910.357 kb on + strand, within Dsui_0894 at 910.402 kb on + strand, within Dsui_0894 at 910.460 kb on + strand, within Dsui_0894 at 910.512 kb on + strand, within Dsui_0894 at 910.592 kb on - strand, within Dsui_0894 at 910.631 kb on + strand, within Dsui_0894 at 910.631 kb on + strand, within Dsui_0894 at 910.641 kb on + strand at 910.658 kb on - strand at 910.667 kb on + strand at 910.727 kb on - strand at 910.916 kb on - strand at 911.155 kb on - strand, within Dsui_0895 at 911.155 kb on - strand, within Dsui_0895 at 911.155 kb on - strand, within Dsui_0895 at 911.182 kb on - strand, within Dsui_0895 at 911.274 kb on - strand, within Dsui_0895 at 911.278 kb on - strand, within Dsui_0895 at 911.331 kb on + strand at 911.331 kb on + strand at 911.373 kb on + strand at 911.380 kb on - strand at 911.398 kb on - strand at 911.405 kb on + strand at 911.405 kb on - strand at 911.410 kb on - strand at 911.413 kb on - strand at 911.420 kb on - strand at 911.551 kb on - strand at 911.628 kb on - strand at 911.638 kb on - strand at 911.735 kb on + strand, within Dsui_0896 at 911.786 kb on + strand at 911.794 kb on - strand at 911.824 kb on + strand, within Dsui_0896 at 911.873 kb on + strand, within Dsui_0896 at 911.948 kb on + strand at 911.951 kb on - strand, within Dsui_0896 at 912.029 kb on + strand, within Dsui_0896 at 912.070 kb on - strand, within Dsui_0896 at 912.089 kb on - strand, within Dsui_0896 at 912.199 kb on + strand, within Dsui_0896 at 912.238 kb on + strand, within Dsui_0896
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Bacitracin 0.2 mg/ml remove 910,037 + +0.2 910,046 - Dsui_0894 0.67 +0.2 910,053 + Dsui_0894 0.68 +0.2 910,129 + +0.2 910,171 + Dsui_0894 0.72 -1.4 910,179 - Dsui_0894 0.73 -1.4 910,184 + Dsui_0894 0.73 -0.8 910,235 - +0.2 910,287 + Dsui_0894 0.77 -0.8 910,287 + Dsui_0894 0.77 -1.4 910,357 + Dsui_0894 0.79 -1.8 910,402 + Dsui_0894 0.81 +0.2 910,460 + Dsui_0894 0.83 -1.8 910,512 + Dsui_0894 0.85 -0.8 910,592 - Dsui_0894 0.88 -1.4 910,631 + Dsui_0894 0.90 +0.2 910,631 + Dsui_0894 0.90 +0.2 910,641 + +0.2 910,658 - +0.2 910,667 + -0.8 910,727 - -0.8 910,916 - -1.0 911,155 - Dsui_0895 0.51 -0.5 911,155 - Dsui_0895 0.51 -0.0 911,155 - Dsui_0895 0.51 -1.6 911,182 - Dsui_0895 0.59 -0.6 911,274 - Dsui_0895 0.86 +0.3 911,278 - Dsui_0895 0.87 -0.3 911,331 + -1.8 911,331 + -1.8 911,373 + +0.2 911,380 - -0.4 911,398 - -1.4 911,405 + -0.8 911,405 - -0.5 911,410 - -1.4 911,413 - -0.7 911,420 - -0.9 911,551 - -0.9 911,628 - +0.2 911,638 - -1.8 911,735 + Dsui_0896 0.13 +0.2 911,786 + +0.2 911,794 - +0.2 911,824 + Dsui_0896 0.16 -0.8 911,873 + Dsui_0896 0.17 -0.0 911,948 + +0.2 911,951 - Dsui_0896 0.20 -1.4 912,029 + Dsui_0896 0.22 -0.8 912,070 - Dsui_0896 0.23 +0.2 912,089 - Dsui_0896 0.24 -0.8 912,199 + Dsui_0896 0.28 -0.8 912,238 + Dsui_0896 0.29 +0.2
Or see this region's nucleotide sequence