Experiment: ALP with Bacitracin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0755 and Dsui_0756 are separated by 142 nucleotides Dsui_0756 and Dsui_0757 are separated by 43 nucleotides Dsui_0757 and Dsui_0758 are separated by 142 nucleotides
Dsui_0755: Dsui_0755 - hypothetical protein, at 754,489 to 755,103
_0755
Dsui_0756: Dsui_0756 - hypothetical protein, at 755,246 to 755,941
_0756
Dsui_0757: Dsui_0757 - HD-GYP domain-containing protein, at 755,985 to 757,190
_0757
Dsui_0758: Dsui_0758 - ATPase component of ABC transporters with duplicated ATPase domain, at 757,333 to 759,237
_0758
Position (kb) 755
756
757
758 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 755.007 kb on - strand, within Dsui_0755 at 755.080 kb on + strand at 755.098 kb on + strand at 755.098 kb on + strand at 755.103 kb on + strand at 755.103 kb on + strand at 755.103 kb on + strand at 755.103 kb on + strand at 755.188 kb on + strand at 755.204 kb on + strand at 755.261 kb on - strand at 755.276 kb on + strand at 755.328 kb on + strand at 755.435 kb on - strand, within Dsui_0756 at 755.450 kb on - strand, within Dsui_0756 at 755.532 kb on + strand, within Dsui_0756 at 755.532 kb on + strand, within Dsui_0756 at 755.540 kb on - strand, within Dsui_0756 at 755.540 kb on - strand, within Dsui_0756 at 755.672 kb on - strand, within Dsui_0756 at 755.712 kb on + strand, within Dsui_0756 at 755.769 kb on - strand, within Dsui_0756 at 755.796 kb on + strand, within Dsui_0756 at 755.817 kb on + strand at 755.826 kb on + strand, within Dsui_0756 at 755.973 kb on + strand at 755.981 kb on - strand at 756.016 kb on + strand at 756.059 kb on - strand at 756.119 kb on - strand, within Dsui_0757 at 756.183 kb on + strand, within Dsui_0757 at 756.251 kb on + strand, within Dsui_0757 at 756.292 kb on + strand at 756.311 kb on - strand, within Dsui_0757 at 756.318 kb on - strand, within Dsui_0757 at 756.359 kb on - strand, within Dsui_0757 at 756.384 kb on + strand, within Dsui_0757 at 756.394 kb on + strand, within Dsui_0757 at 756.438 kb on - strand, within Dsui_0757 at 756.452 kb on + strand at 756.462 kb on + strand at 756.481 kb on - strand, within Dsui_0757 at 756.509 kb on - strand, within Dsui_0757 at 756.574 kb on - strand, within Dsui_0757 at 756.589 kb on - strand, within Dsui_0757 at 756.607 kb on + strand, within Dsui_0757 at 756.626 kb on + strand, within Dsui_0757 at 756.634 kb on - strand, within Dsui_0757 at 756.647 kb on + strand, within Dsui_0757 at 756.647 kb on + strand, within Dsui_0757 at 756.647 kb on + strand, within Dsui_0757 at 756.655 kb on - strand, within Dsui_0757 at 756.706 kb on + strand, within Dsui_0757 at 756.706 kb on + strand, within Dsui_0757 at 756.711 kb on + strand, within Dsui_0757 at 756.801 kb on - strand at 756.908 kb on + strand, within Dsui_0757 at 756.996 kb on + strand, within Dsui_0757 at 757.007 kb on + strand at 757.007 kb on + strand, within Dsui_0757 at 757.015 kb on - strand, within Dsui_0757 at 757.061 kb on - strand, within Dsui_0757 at 757.063 kb on - strand, within Dsui_0757 at 757.070 kb on + strand at 757.083 kb on - strand at 757.137 kb on - strand at 757.198 kb on + strand at 757.198 kb on + strand at 757.206 kb on - strand at 757.211 kb on - strand at 757.215 kb on - strand at 757.217 kb on + strand at 757.330 kb on + strand at 757.420 kb on - strand at 757.517 kb on - strand at 757.603 kb on - strand, within Dsui_0758 at 757.607 kb on + strand, within Dsui_0758 at 757.631 kb on - strand, within Dsui_0758 at 757.710 kb on + strand, within Dsui_0758 at 757.736 kb on + strand, within Dsui_0758 at 757.776 kb on + strand, within Dsui_0758 at 757.807 kb on + strand, within Dsui_0758 at 757.840 kb on - strand, within Dsui_0758 at 757.876 kb on - strand at 757.973 kb on + strand, within Dsui_0758 at 757.981 kb on - strand, within Dsui_0758 at 757.995 kb on + strand, within Dsui_0758 at 758.007 kb on + strand, within Dsui_0758 at 758.007 kb on + strand, within Dsui_0758 at 758.068 kb on - strand, within Dsui_0758 at 758.176 kb on + strand, within Dsui_0758
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Bacitracin 0.2 mg/ml remove 755,007 - Dsui_0755 0.84 -0.4 755,080 + +0.1 755,098 + +1.1 755,098 + -0.9 755,103 + -1.5 755,103 + +0.1 755,103 + +0.1 755,103 + -1.5 755,188 + +0.1 755,204 + -2.2 755,261 - +0.0 755,276 + -0.9 755,328 + +0.1 755,435 - Dsui_0756 0.27 -1.7 755,450 - Dsui_0756 0.29 -2.7 755,532 + Dsui_0756 0.41 -1.9 755,532 + Dsui_0756 0.41 -1.5 755,540 - Dsui_0756 0.42 -2.3 755,540 - Dsui_0756 0.42 -2.2 755,672 - Dsui_0756 0.61 -1.7 755,712 + Dsui_0756 0.67 +0.1 755,769 - Dsui_0756 0.75 -2.7 755,796 + Dsui_0756 0.79 +0.1 755,817 + +0.1 755,826 + Dsui_0756 0.83 +0.1 755,973 + +0.1 755,981 - -0.1 756,016 + -1.5 756,059 - -0.0 756,119 - Dsui_0757 0.11 -0.0 756,183 + Dsui_0757 0.16 -0.9 756,251 + Dsui_0757 0.22 -1.9 756,292 + -0.9 756,311 - Dsui_0757 0.27 -0.2 756,318 - Dsui_0757 0.28 -0.4 756,359 - Dsui_0757 0.31 -0.1 756,384 + Dsui_0757 0.33 +0.1 756,394 + Dsui_0757 0.34 -1.5 756,438 - Dsui_0757 0.38 +0.5 756,452 + +0.1 756,462 + -1.5 756,481 - Dsui_0757 0.41 -0.2 756,509 - Dsui_0757 0.43 -0.8 756,574 - Dsui_0757 0.49 -0.7 756,589 - Dsui_0757 0.50 -0.6 756,607 + Dsui_0757 0.52 -1.5 756,626 + Dsui_0757 0.53 +0.1 756,634 - Dsui_0757 0.54 +0.3 756,647 + Dsui_0757 0.55 -0.9 756,647 + Dsui_0757 0.55 -1.9 756,647 + Dsui_0757 0.55 +0.1 756,655 - Dsui_0757 0.56 +1.5 756,706 + Dsui_0757 0.60 +0.1 756,706 + Dsui_0757 0.60 -0.9 756,711 + Dsui_0757 0.60 -0.9 756,801 - +2.1 756,908 + Dsui_0757 0.77 -1.5 756,996 + Dsui_0757 0.84 +0.1 757,007 + +0.1 757,007 + Dsui_0757 0.85 -2.9 757,015 - Dsui_0757 0.85 -0.4 757,061 - Dsui_0757 0.89 +0.2 757,063 - Dsui_0757 0.89 -0.5 757,070 + -1.5 757,083 - -0.0 757,137 - -0.3 757,198 + -1.9 757,198 + -1.5 757,206 - -0.2 757,211 - -0.7 757,215 - -0.1 757,217 + -0.5 757,330 + -0.8 757,420 - -0.3 757,517 - +0.1 757,603 - Dsui_0758 0.14 +0.1 757,607 + Dsui_0758 0.14 -0.5 757,631 - Dsui_0758 0.16 -3.2 757,710 + Dsui_0758 0.20 +0.8 757,736 + Dsui_0758 0.21 -0.3 757,776 + Dsui_0758 0.23 -0.3 757,807 + Dsui_0758 0.25 -0.8 757,840 - Dsui_0758 0.27 +0.1 757,876 - +0.1 757,973 + Dsui_0758 0.34 -0.2 757,981 - Dsui_0758 0.34 -0.5 757,995 + Dsui_0758 0.35 -0.5 758,007 + Dsui_0758 0.35 -0.1 758,007 + Dsui_0758 0.35 +0.1 758,068 - Dsui_0758 0.39 +0.1 758,176 + Dsui_0758 0.44 -0.1
Or see this region's nucleotide sequence