Strain Fitness in Dechlorosoma suillum PS around Dsui_0657

Experiment: ALP with Bacitracin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0656 and Dsui_0657 are separated by 33 nucleotidesDsui_0657 and Dsui_0658 are separated by 79 nucleotidesDsui_0658 and Dsui_0659 are separated by 14 nucleotidesDsui_0659 and Dsui_0660 are separated by 21 nucleotides Dsui_0656: Dsui_0656 - chemotaxis protein histidine kinase-like protein, at 649,135 to 655,254 _0656 Dsui_0657: Dsui_0657 - methyl-accepting chemotaxis protein, at 655,288 to 657,486 _0657 Dsui_0658: Dsui_0658 - chemotaxis signal transduction protein, at 657,566 to 658,078 _0658 Dsui_0659: Dsui_0659 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 658,093 to 658,455 _0659 Dsui_0660: Dsui_0660 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 658,477 to 658,875 _0660 Position (kb) 655 656 657 658Strain fitness (log2 ratio) -2 -1 0 1at 654.356 kb on + strand, within Dsui_0656at 654.402 kb on + strandat 654.414 kb on + strandat 654.589 kb on - strand, within Dsui_0656at 654.758 kb on + strandat 654.791 kb on + strandat 654.824 kb on + strandat 654.882 kb on + strandat 655.011 kb on + strandat 655.022 kb on + strandat 655.051 kb on - strandat 655.070 kb on - strandat 655.213 kb on - strandat 655.224 kb on - strandat 655.252 kb on + strandat 655.304 kb on - strandat 655.304 kb on - strandat 655.384 kb on + strandat 655.491 kb on + strandat 655.749 kb on + strand, within Dsui_0657at 655.817 kb on - strand, within Dsui_0657at 655.817 kb on - strand, within Dsui_0657at 655.868 kb on - strand, within Dsui_0657at 655.901 kb on + strandat 655.920 kb on - strand, within Dsui_0657at 655.996 kb on + strand, within Dsui_0657at 656.035 kb on - strand, within Dsui_0657at 656.085 kb on - strand, within Dsui_0657at 656.089 kb on + strand, within Dsui_0657at 656.102 kb on - strand, within Dsui_0657at 656.131 kb on - strand, within Dsui_0657at 656.137 kb on - strand, within Dsui_0657at 656.220 kb on - strand, within Dsui_0657at 656.350 kb on + strand, within Dsui_0657at 656.351 kb on + strand, within Dsui_0657at 656.465 kb on - strand, within Dsui_0657at 656.486 kb on - strand, within Dsui_0657at 656.593 kb on - strand, within Dsui_0657at 656.638 kb on - strand, within Dsui_0657at 656.783 kb on - strand, within Dsui_0657at 656.788 kb on - strand, within Dsui_0657at 656.863 kb on - strand, within Dsui_0657at 656.891 kb on + strand, within Dsui_0657at 656.897 kb on + strand, within Dsui_0657at 656.905 kb on - strand, within Dsui_0657at 656.974 kb on + strand, within Dsui_0657at 657.064 kb on - strand, within Dsui_0657at 657.089 kb on + strand, within Dsui_0657at 657.140 kb on + strandat 657.247 kb on - strand, within Dsui_0657at 657.267 kb on - strandat 657.362 kb on + strandat 657.602 kb on + strandat 657.619 kb on + strandat 657.662 kb on + strand, within Dsui_0658at 657.791 kb on - strand, within Dsui_0658at 657.866 kb on - strand, within Dsui_0658at 657.966 kb on - strand, within Dsui_0658at 658.090 kb on + strandat 658.096 kb on - strandat 658.251 kb on + strandat 658.316 kb on - strand, within Dsui_0659at 658.328 kb on + strandat 658.457 kb on + strandat 658.458 kb on - strandat 658.459 kb on - strandat 658.486 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Bacitracin 0.2 mg/ml
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654,356 + Dsui_0656 0.85 -1.5
654,402 + -0.5
654,414 + +0.1
654,589 - Dsui_0656 0.89 -0.1
654,758 + -0.6
654,791 + +0.1
654,824 + -1.5
654,882 + -1.8
655,011 + -0.5
655,022 + -2.0
655,051 - +0.1
655,070 - -0.7
655,213 - +0.2
655,224 - +0.1
655,252 + +0.5
655,304 - -0.8
655,304 - -0.8
655,384 + +0.7
655,491 + +0.1
655,749 + Dsui_0657 0.21 -0.9
655,817 - Dsui_0657 0.24 +0.3
655,817 - Dsui_0657 0.24 +0.0
655,868 - Dsui_0657 0.26 -0.0
655,901 + -0.9
655,920 - Dsui_0657 0.29 +0.2
655,996 + Dsui_0657 0.32 -0.5
656,035 - Dsui_0657 0.34 -0.0
656,085 - Dsui_0657 0.36 -0.3
656,089 + Dsui_0657 0.36 -2.0
656,102 - Dsui_0657 0.37 -0.0
656,131 - Dsui_0657 0.38 -0.1
656,137 - Dsui_0657 0.39 +0.1
656,220 - Dsui_0657 0.42 -0.8
656,350 + Dsui_0657 0.48 -0.9
656,351 + Dsui_0657 0.48 -1.5
656,465 - Dsui_0657 0.54 +0.0
656,486 - Dsui_0657 0.54 -0.4
656,593 - Dsui_0657 0.59 -0.0
656,638 - Dsui_0657 0.61 -0.1
656,783 - Dsui_0657 0.68 +0.0
656,788 - Dsui_0657 0.68 +0.7
656,863 - Dsui_0657 0.72 -0.2
656,891 + Dsui_0657 0.73 +1.7
656,897 + Dsui_0657 0.73 -1.5
656,905 - Dsui_0657 0.74 +0.1
656,974 + Dsui_0657 0.77 +0.1
657,064 - Dsui_0657 0.81 -0.1
657,089 + Dsui_0657 0.82 +0.1
657,140 + +0.1
657,247 - Dsui_0657 0.89 -0.1
657,267 - +0.3
657,362 + -0.9
657,602 + -2.5
657,619 + +0.1
657,662 + Dsui_0658 0.19 -0.9
657,791 - Dsui_0658 0.44 +0.1
657,866 - Dsui_0658 0.58 -0.3
657,966 - Dsui_0658 0.78 +0.1
658,090 + -0.9
658,096 - +0.1
658,251 + +0.1
658,316 - Dsui_0659 0.61 -0.0
658,328 + +0.1
658,457 + +0.1
658,458 - +0.2
658,459 - -0.3
658,486 - +0.1

Or see this region's nucleotide sequence