Experiment: ALP with Bacitracin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0538 and Dsui_0539 are separated by 9 nucleotides Dsui_0539 and Dsui_0540 overlap by 4 nucleotides Dsui_0540 and Dsui_0541 overlap by 8 nucleotides
Dsui_0538: Dsui_0538 - hypothetical protein, at 542,492 to 543,235
_0538
Dsui_0539: Dsui_0539 - ABC-type Fe3+-hydroxamate transport system, periplasmic component, at 543,245 to 544,129
_0539
Dsui_0540: Dsui_0540 - L-threonine-O-3-phosphate decarboxylase, at 544,126 to 545,130
_0540
Dsui_0541: Dsui_0541 - cobalamin biosynthesis protein CobD, at 545,123 to 546,094
_0541
Position (kb) 544
545
546 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 543.273 kb on + strand at 543.295 kb on + strand at 543.351 kb on + strand, within Dsui_0539 at 543.375 kb on + strand, within Dsui_0539 at 543.609 kb on - strand, within Dsui_0539 at 543.609 kb on - strand, within Dsui_0539 at 543.615 kb on + strand, within Dsui_0539 at 543.615 kb on + strand, within Dsui_0539 at 543.623 kb on - strand, within Dsui_0539 at 543.750 kb on + strand at 543.786 kb on - strand, within Dsui_0539 at 543.788 kb on + strand, within Dsui_0539 at 543.830 kb on + strand, within Dsui_0539 at 543.952 kb on - strand, within Dsui_0539 at 544.214 kb on - strand at 544.329 kb on + strand, within Dsui_0540 at 544.337 kb on - strand, within Dsui_0540 at 544.352 kb on + strand at 544.484 kb on + strand, within Dsui_0540 at 544.526 kb on + strand, within Dsui_0540 at 544.556 kb on - strand, within Dsui_0540 at 544.672 kb on - strand, within Dsui_0540 at 544.937 kb on - strand, within Dsui_0540 at 544.965 kb on + strand, within Dsui_0540 at 544.965 kb on + strand at 544.973 kb on - strand, within Dsui_0540 at 545.035 kb on - strand at 545.537 kb on - strand, within Dsui_0541 at 545.556 kb on + strand, within Dsui_0541 at 545.564 kb on - strand, within Dsui_0541 at 545.612 kb on - strand, within Dsui_0541 at 545.612 kb on - strand, within Dsui_0541 at 545.650 kb on - strand, within Dsui_0541 at 545.671 kb on - strand, within Dsui_0541 at 545.671 kb on - strand, within Dsui_0541 at 545.671 kb on - strand, within Dsui_0541 at 545.682 kb on - strand, within Dsui_0541 at 545.682 kb on - strand, within Dsui_0541 at 545.697 kb on - strand, within Dsui_0541 at 545.733 kb on + strand at 545.738 kb on + strand, within Dsui_0541 at 545.799 kb on - strand, within Dsui_0541 at 545.861 kb on + strand at 545.886 kb on - strand, within Dsui_0541 at 545.922 kb on - strand, within Dsui_0541 at 546.037 kb on - strand at 546.076 kb on + strand at 546.079 kb on - strand at 546.084 kb on - strand at 546.084 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Bacitracin 0.2 mg/ml remove 543,273 + +0.1 543,295 + +0.1 543,351 + Dsui_0539 0.12 +0.1 543,375 + Dsui_0539 0.15 -0.9 543,609 - Dsui_0539 0.41 -0.2 543,609 - Dsui_0539 0.41 -1.1 543,615 + Dsui_0539 0.42 +0.1 543,615 + Dsui_0539 0.42 +0.1 543,623 - Dsui_0539 0.43 -0.9 543,750 + +0.1 543,786 - Dsui_0539 0.61 -0.3 543,788 + Dsui_0539 0.61 +0.1 543,830 + Dsui_0539 0.66 -1.5 543,952 - Dsui_0539 0.80 -0.8 544,214 - +0.6 544,329 + Dsui_0540 0.20 +0.1 544,337 - Dsui_0540 0.21 -1.2 544,352 + +0.1 544,484 + Dsui_0540 0.36 -1.5 544,526 + Dsui_0540 0.40 -0.9 544,556 - Dsui_0540 0.43 -0.4 544,672 - Dsui_0540 0.54 -1.7 544,937 - Dsui_0540 0.81 +0.1 544,965 + Dsui_0540 0.83 +0.1 544,965 + +0.1 544,973 - Dsui_0540 0.84 -0.2 545,035 - -0.6 545,537 - Dsui_0541 0.43 -0.7 545,556 + Dsui_0541 0.45 -2.2 545,564 - Dsui_0541 0.45 -0.5 545,612 - Dsui_0541 0.50 -0.2 545,612 - Dsui_0541 0.50 +0.2 545,650 - Dsui_0541 0.54 -3.9 545,671 - Dsui_0541 0.56 -0.2 545,671 - Dsui_0541 0.56 -1.5 545,671 - Dsui_0541 0.56 -1.3 545,682 - Dsui_0541 0.58 -0.3 545,682 - Dsui_0541 0.58 -0.9 545,697 - Dsui_0541 0.59 -0.5 545,733 + -0.9 545,738 + Dsui_0541 0.63 -2.7 545,799 - Dsui_0541 0.70 -0.6 545,861 + -0.9 545,886 - Dsui_0541 0.78 -0.7 545,922 - Dsui_0541 0.82 -0.5 546,037 - -0.8 546,076 + +0.1 546,079 - -0.4 546,084 - -0.3 546,084 - -0.9
Or see this region's nucleotide sequence