Experiment: ALP with Bacitracin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0502 and Dsui_0503 are separated by 46 nucleotides Dsui_0503 and Dsui_0504 overlap by 4 nucleotides Dsui_0504 and Dsui_0505 are separated by 55 nucleotides Dsui_0505 and Dsui_0506 are separated by 51 nucleotides
Dsui_0502: Dsui_0502 - enoyl-CoA hydratase/carnithine racemase, at 504,775 to 505,566
_0502
Dsui_0503: Dsui_0503 - Mg-dependent DNase, at 505,613 to 506,473
_0503
Dsui_0504: Dsui_0504 - putative membrane protein, at 506,470 to 507,375
_0504
Dsui_0505: Dsui_0505 - 7-cyano-7-deazaguanine reductase, at 507,431 to 508,264
_0505
Dsui_0506: Dsui_0506 - diguanylate cyclase (GGDEF) domain-containing protein, at 508,316 to 510,517
_0506
Position (kb) 506
507
508 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 505.618 kb on + strand at 505.713 kb on - strand at 505.713 kb on - strand at 505.810 kb on - strand at 505.810 kb on - strand at 505.875 kb on + strand, within Dsui_0503 at 505.914 kb on + strand, within Dsui_0503 at 505.966 kb on + strand, within Dsui_0503 at 505.989 kb on - strand, within Dsui_0503 at 506.024 kb on - strand, within Dsui_0503 at 506.101 kb on - strand, within Dsui_0503 at 506.134 kb on + strand, within Dsui_0503 at 506.456 kb on - strand at 506.530 kb on - strand at 506.618 kb on - strand at 506.618 kb on - strand, within Dsui_0504 at 506.636 kb on + strand, within Dsui_0504 at 506.644 kb on - strand, within Dsui_0504 at 506.655 kb on + strand, within Dsui_0504 at 506.713 kb on - strand at 506.713 kb on - strand at 506.746 kb on - strand, within Dsui_0504 at 506.826 kb on - strand, within Dsui_0504 at 506.964 kb on + strand, within Dsui_0504 at 506.972 kb on - strand, within Dsui_0504 at 507.005 kb on + strand, within Dsui_0504 at 507.038 kb on + strand, within Dsui_0504 at 507.084 kb on - strand, within Dsui_0504 at 507.150 kb on + strand, within Dsui_0504 at 507.176 kb on - strand, within Dsui_0504 at 507.221 kb on + strand, within Dsui_0504 at 507.254 kb on - strand at 507.351 kb on + strand at 507.352 kb on + strand at 507.357 kb on + strand at 507.365 kb on - strand at 507.369 kb on + strand at 507.369 kb on + strand at 507.503 kb on - strand at 507.622 kb on + strand, within Dsui_0505 at 507.622 kb on + strand, within Dsui_0505 at 507.640 kb on - strand at 507.669 kb on + strand, within Dsui_0505 at 507.669 kb on + strand, within Dsui_0505 at 507.677 kb on - strand, within Dsui_0505 at 507.693 kb on + strand, within Dsui_0505 at 507.706 kb on + strand, within Dsui_0505 at 507.714 kb on + strand, within Dsui_0505 at 507.721 kb on + strand, within Dsui_0505 at 507.728 kb on + strand, within Dsui_0505 at 507.871 kb on - strand at 507.967 kb on + strand, within Dsui_0505 at 508.034 kb on - strand, within Dsui_0505 at 508.037 kb on + strand, within Dsui_0505 at 508.105 kb on + strand, within Dsui_0505 at 508.148 kb on + strand, within Dsui_0505 at 508.153 kb on + strand, within Dsui_0505 at 508.161 kb on - strand, within Dsui_0505
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Bacitracin 0.2 mg/ml remove 505,618 + -0.3 505,713 - +0.1 505,713 - +0.1 505,810 - -0.9 505,810 - -2.3 505,875 + Dsui_0503 0.30 -0.1 505,914 + Dsui_0503 0.35 -0.9 505,966 + Dsui_0503 0.41 -0.4 505,989 - Dsui_0503 0.44 -1.5 506,024 - Dsui_0503 0.48 -0.9 506,101 - Dsui_0503 0.57 -2.5 506,134 + Dsui_0503 0.61 -0.1 506,456 - -2.3 506,530 - +0.1 506,618 - +0.1 506,618 - Dsui_0504 0.16 -0.9 506,636 + Dsui_0504 0.18 -0.9 506,644 - Dsui_0504 0.19 +0.1 506,655 + Dsui_0504 0.20 -1.3 506,713 - +0.1 506,713 - +0.1 506,746 - Dsui_0504 0.30 -1.5 506,826 - Dsui_0504 0.39 -1.5 506,964 + Dsui_0504 0.55 -0.5 506,972 - Dsui_0504 0.55 +0.1 507,005 + Dsui_0504 0.59 +0.5 507,038 + Dsui_0504 0.63 -0.4 507,084 - Dsui_0504 0.68 -1.9 507,150 + Dsui_0504 0.75 +0.4 507,176 - Dsui_0504 0.78 -1.5 507,221 + Dsui_0504 0.83 -1.4 507,254 - +0.1 507,351 + -0.3 507,352 + -0.3 507,357 + -2.1 507,365 - +0.1 507,369 + +0.1 507,369 + -0.7 507,503 - +0.1 507,622 + Dsui_0505 0.23 -0.5 507,622 + Dsui_0505 0.23 -1.5 507,640 - +0.1 507,669 + Dsui_0505 0.29 -2.2 507,669 + Dsui_0505 0.29 -0.9 507,677 - Dsui_0505 0.29 +0.1 507,693 + Dsui_0505 0.31 -3.1 507,706 + Dsui_0505 0.33 -0.9 507,714 + Dsui_0505 0.34 -1.5 507,721 + Dsui_0505 0.35 -0.9 507,728 + Dsui_0505 0.36 -1.3 507,871 - +0.1 507,967 + Dsui_0505 0.64 -0.9 508,034 - Dsui_0505 0.72 +0.1 508,037 + Dsui_0505 0.73 -0.9 508,105 + Dsui_0505 0.81 -1.7 508,148 + Dsui_0505 0.86 -0.5 508,153 + Dsui_0505 0.87 -2.0 508,161 - Dsui_0505 0.88 +0.1
Or see this region's nucleotide sequence