Experiment: ALP with Bacitracin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0395 and Dsui_0396 are separated by 124 nucleotides Dsui_0396 and Dsui_0397 overlap by 4 nucleotides Dsui_0397 and Dsui_0398 overlap by 4 nucleotides
Dsui_0395: Dsui_0395 - outer membrane lipoprotein, at 393,704 to 394,171
_0395
Dsui_0396: Dsui_0396 - putative hemolysin, at 394,296 to 395,054
_0396
Dsui_0397: Dsui_0397 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 395,051 to 395,878
_0397
Dsui_0398: Dsui_0398 - UDP-glucose-4-epimerase, at 395,875 to 396,888
_0398
Position (kb) 395
396 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 394.091 kb on - strand, within Dsui_0395 at 394.172 kb on + strand at 394.172 kb on + strand at 394.187 kb on - strand at 394.287 kb on + strand at 394.301 kb on - strand at 394.362 kb on - strand at 394.507 kb on - strand, within Dsui_0396 at 394.529 kb on + strand, within Dsui_0396 at 394.625 kb on - strand, within Dsui_0396 at 394.662 kb on - strand, within Dsui_0396 at 394.687 kb on + strand, within Dsui_0396 at 394.702 kb on + strand, within Dsui_0396 at 394.710 kb on - strand at 394.710 kb on - strand, within Dsui_0396 at 394.754 kb on - strand, within Dsui_0396 at 394.776 kb on - strand, within Dsui_0396 at 394.789 kb on - strand, within Dsui_0396 at 394.800 kb on + strand, within Dsui_0396 at 394.821 kb on + strand, within Dsui_0396 at 394.828 kb on - strand, within Dsui_0396 at 394.831 kb on + strand, within Dsui_0396 at 394.897 kb on - strand, within Dsui_0396 at 395.016 kb on + strand at 395.092 kb on - strand at 395.109 kb on - strand at 395.133 kb on + strand at 395.158 kb on - strand, within Dsui_0397 at 395.184 kb on - strand at 395.184 kb on - strand at 395.206 kb on - strand, within Dsui_0397 at 395.280 kb on - strand, within Dsui_0397 at 395.427 kb on + strand, within Dsui_0397 at 395.560 kb on + strand, within Dsui_0397 at 395.729 kb on - strand, within Dsui_0397 at 395.747 kb on - strand, within Dsui_0397 at 395.873 kb on + strand at 395.878 kb on + strand at 396.068 kb on + strand, within Dsui_0398 at 396.094 kb on + strand, within Dsui_0398 at 396.147 kb on - strand, within Dsui_0398 at 396.213 kb on + strand at 396.232 kb on - strand, within Dsui_0398 at 396.276 kb on + strand, within Dsui_0398 at 396.489 kb on - strand, within Dsui_0398 at 396.510 kb on - strand, within Dsui_0398 at 396.535 kb on + strand, within Dsui_0398 at 396.560 kb on + strand, within Dsui_0398 at 396.578 kb on - strand, within Dsui_0398 at 396.612 kb on - strand, within Dsui_0398 at 396.633 kb on - strand, within Dsui_0398 at 396.740 kb on + strand, within Dsui_0398 at 396.740 kb on + strand, within Dsui_0398 at 396.748 kb on - strand, within Dsui_0398 at 396.804 kb on - strand at 396.864 kb on + strand at 396.872 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Bacitracin 0.2 mg/ml remove 394,091 - Dsui_0395 0.83 -1.9 394,172 + -0.1 394,172 + -0.4 394,187 - +0.1 394,287 + -0.4 394,301 - +0.1 394,362 - -2.5 394,507 - Dsui_0396 0.28 -2.2 394,529 + Dsui_0396 0.31 -0.9 394,625 - Dsui_0396 0.43 +0.1 394,662 - Dsui_0396 0.48 -1.5 394,687 + Dsui_0396 0.52 -1.5 394,702 + Dsui_0396 0.53 +0.1 394,710 - +0.1 394,710 - Dsui_0396 0.55 -2.5 394,754 - Dsui_0396 0.60 -2.2 394,776 - Dsui_0396 0.63 -0.9 394,789 - Dsui_0396 0.65 -3.3 394,800 + Dsui_0396 0.66 +0.5 394,821 + Dsui_0396 0.69 -0.2 394,828 - Dsui_0396 0.70 +0.1 394,831 + Dsui_0396 0.70 -0.3 394,897 - Dsui_0396 0.79 +0.1 395,016 + +0.3 395,092 - -1.9 395,109 - +0.1 395,133 + -0.5 395,158 - Dsui_0397 0.13 -1.5 395,184 - +0.1 395,184 - +0.1 395,206 - Dsui_0397 0.19 -1.5 395,280 - Dsui_0397 0.28 +0.1 395,427 + Dsui_0397 0.45 -2.9 395,560 + Dsui_0397 0.61 -1.4 395,729 - Dsui_0397 0.82 -0.8 395,747 - Dsui_0397 0.84 -0.1 395,873 + +0.1 395,878 + -0.5 396,068 + Dsui_0398 0.19 -3.1 396,094 + Dsui_0398 0.22 +0.1 396,147 - Dsui_0398 0.27 -2.9 396,213 + +0.1 396,232 - Dsui_0398 0.35 -3.2 396,276 + Dsui_0398 0.40 -0.9 396,489 - Dsui_0398 0.61 -4.5 396,510 - Dsui_0398 0.63 -2.5 396,535 + Dsui_0398 0.65 -0.9 396,560 + Dsui_0398 0.68 -0.9 396,578 - Dsui_0398 0.69 -1.5 396,612 - Dsui_0398 0.73 -2.8 396,633 - Dsui_0398 0.75 -2.6 396,740 + Dsui_0398 0.85 -0.9 396,740 + Dsui_0398 0.85 +0.1 396,748 - Dsui_0398 0.86 -2.4 396,804 - -2.9 396,864 + +0.1 396,872 - -2.3
Or see this region's nucleotide sequence