Experiment: ALP with Bacitracin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0170 and Dsui_0171 are separated by 555 nucleotides Dsui_0171 and Dsui_0172 overlap by 4 nucleotides Dsui_0172 and Dsui_0173 overlap by 4 nucleotides
Dsui_0170: Dsui_0170 - glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase, at 173,724 to 174,296
_0170
Dsui_0171: Dsui_0171 - putative transcriptional regulator, at 174,852 to 175,070
_0171
Dsui_0172: Dsui_0172 - hypothetical protein, at 175,067 to 175,741
_0172
Dsui_0173: Dsui_0173 - site-specific DNA methylase, at 175,738 to 177,546
_0173
Position (kb)
175
176 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 174.500 kb on + strand at 174.530 kb on + strand at 174.536 kb on + strand at 174.536 kb on + strand at 174.544 kb on - strand at 174.544 kb on - strand at 174.544 kb on - strand at 174.544 kb on - strand at 174.544 kb on - strand at 174.566 kb on + strand at 174.595 kb on + strand at 174.663 kb on + strand at 174.666 kb on - strand at 174.671 kb on - strand at 174.676 kb on - strand at 174.676 kb on - strand at 174.697 kb on + strand at 174.753 kb on + strand at 174.780 kb on - strand at 174.780 kb on - strand at 174.785 kb on - strand at 174.822 kb on + strand at 174.823 kb on - strand at 174.823 kb on - strand at 174.955 kb on + strand, within Dsui_0171 at 174.982 kb on + strand, within Dsui_0171 at 174.990 kb on - strand, within Dsui_0171 at 175.018 kb on - strand, within Dsui_0171 at 175.028 kb on + strand, within Dsui_0171 at 175.041 kb on - strand, within Dsui_0171 at 175.074 kb on - strand at 175.122 kb on + strand at 175.122 kb on + strand at 175.123 kb on + strand at 175.212 kb on + strand, within Dsui_0172 at 175.215 kb on - strand, within Dsui_0172 at 175.238 kb on + strand at 175.246 kb on - strand, within Dsui_0172 at 175.257 kb on - strand at 175.274 kb on + strand, within Dsui_0172 at 175.307 kb on - strand, within Dsui_0172 at 175.347 kb on + strand, within Dsui_0172 at 175.399 kb on + strand at 175.622 kb on + strand, within Dsui_0172 at 175.625 kb on - strand, within Dsui_0172 at 175.635 kb on + strand, within Dsui_0172 at 175.660 kb on - strand, within Dsui_0172 at 175.735 kb on + strand at 175.809 kb on + strand at 175.817 kb on - strand at 175.834 kb on - strand at 175.867 kb on + strand at 175.875 kb on - strand at 175.950 kb on + strand, within Dsui_0173 at 176.266 kb on - strand, within Dsui_0173 at 176.363 kb on + strand at 176.628 kb on - strand, within Dsui_0173 at 176.629 kb on + strand at 176.728 kb on - strand, within Dsui_0173
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Bacitracin 0.2 mg/ml remove 174,500 + +0.3 174,530 + +0.3 174,536 + -0.7 174,536 + -0.7 174,544 - +0.3 174,544 - +0.3 174,544 - -1.2 174,544 - -0.7 174,544 - -0.7 174,566 + -2.5 174,595 + +0.3 174,663 + -1.2 174,666 - -0.7 174,671 - -1.7 174,676 - +0.3 174,676 - -2.0 174,697 + +0.3 174,753 + -0.7 174,780 - +0.3 174,780 - -0.7 174,785 - -0.7 174,822 + +0.3 174,823 - -2.0 174,823 - +0.3 174,955 + Dsui_0171 0.47 -0.7 174,982 + Dsui_0171 0.59 -0.7 174,990 - Dsui_0171 0.63 -2.0 175,018 - Dsui_0171 0.76 -2.0 175,028 + Dsui_0171 0.80 -1.2 175,041 - Dsui_0171 0.86 -2.5 175,074 - -0.7 175,122 + -1.1 175,122 + -0.1 175,123 + -1.0 175,212 + Dsui_0172 0.21 -0.7 175,215 - Dsui_0172 0.22 -2.5 175,238 + -0.7 175,246 - Dsui_0172 0.27 -1.2 175,257 - +0.3 175,274 + Dsui_0172 0.31 +0.3 175,307 - Dsui_0172 0.36 +0.3 175,347 + Dsui_0172 0.41 -2.8 175,399 + +0.3 175,622 + Dsui_0172 0.82 -0.7 175,625 - Dsui_0172 0.83 -0.7 175,635 + Dsui_0172 0.84 -0.7 175,660 - Dsui_0172 0.88 -2.7 175,735 + +0.3 175,809 + +0.3 175,817 - +0.3 175,834 - -1.2 175,867 + -0.7 175,875 - -0.7 175,950 + Dsui_0173 0.12 +0.3 176,266 - Dsui_0173 0.29 -1.7 176,363 + -0.7 176,628 - Dsui_0173 0.49 -2.2 176,629 + +0.3 176,728 - Dsui_0173 0.55 -1.2
Or see this region's nucleotide sequence