Experiment: ALP with Bacitracin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0169 and Dsui_0170 overlap by 4 nucleotides Dsui_0170 and Dsui_0171 are separated by 555 nucleotides Dsui_0171 and Dsui_0172 overlap by 4 nucleotides
Dsui_0169: Dsui_0169 - anthranilate phosphoribosyltransferase, at 172,705 to 173,727
_0169
Dsui_0170: Dsui_0170 - glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase, at 173,724 to 174,296
_0170
Dsui_0171: Dsui_0171 - putative transcriptional regulator, at 174,852 to 175,070
_0171
Dsui_0172: Dsui_0172 - hypothetical protein, at 175,067 to 175,741
_0172
Position (kb)
173
174
175 Strain fitness (log2 ratio)
-2
-1
0
1 at 173.733 kb on - strand at 173.733 kb on - strand at 174.500 kb on + strand at 174.530 kb on + strand at 174.536 kb on + strand at 174.536 kb on + strand at 174.544 kb on - strand at 174.544 kb on - strand at 174.544 kb on - strand at 174.544 kb on - strand at 174.544 kb on - strand at 174.566 kb on + strand at 174.595 kb on + strand at 174.663 kb on + strand at 174.666 kb on - strand at 174.671 kb on - strand at 174.676 kb on - strand at 174.676 kb on - strand at 174.697 kb on + strand at 174.753 kb on + strand at 174.780 kb on - strand at 174.780 kb on - strand at 174.785 kb on - strand at 174.822 kb on + strand at 174.823 kb on - strand at 174.823 kb on - strand at 174.955 kb on + strand, within Dsui_0171 at 174.982 kb on + strand, within Dsui_0171 at 174.990 kb on - strand, within Dsui_0171 at 175.018 kb on - strand, within Dsui_0171 at 175.028 kb on + strand, within Dsui_0171 at 175.041 kb on - strand, within Dsui_0171 at 175.074 kb on - strand at 175.122 kb on + strand at 175.122 kb on + strand at 175.123 kb on + strand at 175.212 kb on + strand, within Dsui_0172 at 175.215 kb on - strand, within Dsui_0172 at 175.238 kb on + strand at 175.246 kb on - strand, within Dsui_0172 at 175.257 kb on - strand at 175.274 kb on + strand, within Dsui_0172
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Bacitracin 0.2 mg/ml remove 173,733 - -1.2 173,733 - +0.1 174,500 + +0.3 174,530 + +0.3 174,536 + -0.7 174,536 + -0.7 174,544 - +0.3 174,544 - +0.3 174,544 - -1.2 174,544 - -0.7 174,544 - -0.7 174,566 + -2.5 174,595 + +0.3 174,663 + -1.2 174,666 - -0.7 174,671 - -1.7 174,676 - +0.3 174,676 - -2.0 174,697 + +0.3 174,753 + -0.7 174,780 - +0.3 174,780 - -0.7 174,785 - -0.7 174,822 + +0.3 174,823 - -2.0 174,823 - +0.3 174,955 + Dsui_0171 0.47 -0.7 174,982 + Dsui_0171 0.59 -0.7 174,990 - Dsui_0171 0.63 -2.0 175,018 - Dsui_0171 0.76 -2.0 175,028 + Dsui_0171 0.80 -1.2 175,041 - Dsui_0171 0.86 -2.5 175,074 - -0.7 175,122 + -1.1 175,122 + -0.1 175,123 + -1.0 175,212 + Dsui_0172 0.21 -0.7 175,215 - Dsui_0172 0.22 -2.5 175,238 + -0.7 175,246 - Dsui_0172 0.27 -1.2 175,257 - +0.3 175,274 + Dsui_0172 0.31 +0.3
Or see this region's nucleotide sequence