Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00670

Experiment: PYE_noCalcium 4C survival rep2 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00669 and CCNA_00670 overlap by 4 nucleotidesCCNA_00670 and CCNA_00671 are separated by 9 nucleotidesCCNA_00671 and CCNA_00672 are separated by 133 nucleotides CCNA_00669: CCNA_00669 - glycosyltransferase family 99 protein WbsX, at 725,750 to 728,206 _00669 CCNA_00670: CCNA_00670 - ABC-type polysaccharide/polyol phosphate transport system, ATPase component, at 728,203 to 728,955 _00670 CCNA_00671: CCNA_00671 - ABC-type polysaccharide/polyol phosphate export system, permease component, at 728,965 to 729,756 _00671 CCNA_00672: CCNA_00672 - hypothetical protein, at 729,890 to 730,693 _00672 Position (kb) 728 729Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 727.208 kb on + strand, within CCNA_00669at 727.211 kb on - strand, within CCNA_00669at 727.223 kb on + strand, within CCNA_00669at 727.235 kb on + strand, within CCNA_00669at 727.257 kb on + strand, within CCNA_00669at 727.265 kb on - strand, within CCNA_00669at 727.334 kb on - strand, within CCNA_00669at 727.341 kb on + strand, within CCNA_00669at 727.341 kb on + strand, within CCNA_00669at 727.341 kb on + strand, within CCNA_00669at 727.341 kb on + strand, within CCNA_00669at 727.341 kb on + strand, within CCNA_00669at 727.349 kb on - strand, within CCNA_00669at 727.349 kb on - strand, within CCNA_00669at 727.349 kb on - strand, within CCNA_00669at 727.349 kb on - strand, within CCNA_00669at 727.364 kb on + strand, within CCNA_00669at 727.372 kb on - strand, within CCNA_00669at 727.372 kb on - strand, within CCNA_00669at 727.372 kb on - strand, within CCNA_00669at 727.389 kb on - strand, within CCNA_00669at 727.405 kb on - strand, within CCNA_00669at 727.431 kb on + strand, within CCNA_00669at 727.439 kb on - strand, within CCNA_00669at 727.457 kb on - strand, within CCNA_00669at 727.468 kb on + strand, within CCNA_00669at 727.473 kb on + strand, within CCNA_00669at 727.478 kb on + strand, within CCNA_00669at 727.481 kb on - strand, within CCNA_00669at 727.486 kb on - strand, within CCNA_00669at 727.486 kb on - strand, within CCNA_00669at 727.494 kb on + strand, within CCNA_00669at 727.528 kb on + strand, within CCNA_00669at 727.529 kb on + strand, within CCNA_00669at 727.595 kb on + strand, within CCNA_00669at 727.598 kb on - strand, within CCNA_00669at 727.634 kb on + strand, within CCNA_00669at 727.634 kb on + strand, within CCNA_00669at 727.642 kb on - strand, within CCNA_00669at 727.642 kb on - strand, within CCNA_00669at 727.642 kb on - strand, within CCNA_00669at 727.642 kb on - strand, within CCNA_00669at 727.642 kb on - strand, within CCNA_00669at 727.662 kb on - strand, within CCNA_00669at 727.677 kb on - strand, within CCNA_00669at 727.835 kb on + strand, within CCNA_00669at 727.835 kb on + strand, within CCNA_00669at 727.836 kb on + strand, within CCNA_00669at 727.837 kb on + strand, within CCNA_00669at 727.860 kb on + strand, within CCNA_00669at 727.870 kb on + strand, within CCNA_00669at 727.878 kb on - strand, within CCNA_00669at 727.938 kb on + strand, within CCNA_00669at 727.938 kb on + strand, within CCNA_00669at 727.946 kb on - strand, within CCNA_00669at 727.989 kb on - strandat 727.993 kb on + strandat 728.001 kb on - strandat 728.006 kb on - strandat 728.012 kb on + strandat 728.020 kb on - strandat 728.022 kb on + strandat 728.023 kb on + strandat 728.023 kb on + strandat 728.029 kb on + strandat 728.031 kb on - strandat 728.031 kb on - strandat 728.067 kb on + strandat 728.067 kb on + strandat 728.075 kb on - strandat 728.075 kb on - strandat 728.075 kb on - strandat 728.077 kb on + strandat 728.123 kb on + strandat 728.123 kb on + strandat 728.123 kb on + strandat 728.123 kb on + strandat 728.131 kb on - strandat 728.131 kb on - strandat 728.131 kb on - strandat 728.131 kb on - strandat 728.167 kb on + strandat 728.187 kb on - strandat 728.187 kb on - strandat 728.234 kb on - strandat 728.236 kb on + strandat 728.244 kb on - strandat 728.310 kb on + strand, within CCNA_00670at 728.318 kb on - strand, within CCNA_00670at 728.324 kb on - strand, within CCNA_00670at 728.565 kb on - strand, within CCNA_00670at 728.606 kb on - strand, within CCNA_00670at 728.624 kb on - strand, within CCNA_00670at 728.936 kb on + strandat 728.960 kb on + strandat 728.968 kb on - strandat 729.782 kb on + strandat 729.782 kb on + strandat 729.782 kb on + strandat 729.799 kb on + strandat 729.807 kb on - strandat 729.817 kb on - strandat 729.837 kb on - strandat 729.837 kb on - strandat 729.850 kb on + strandat 729.855 kb on + strandat 729.922 kb on + strandat 729.926 kb on + strandat 729.927 kb on + strandat 729.927 kb on + strandat 729.927 kb on + strandat 729.933 kb on + strandat 729.935 kb on - strandat 729.941 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE_noCalcium 4C survival rep2 12 days
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727,208 + CCNA_00669 0.59 +0.2
727,211 - CCNA_00669 0.59 +0.9
727,223 + CCNA_00669 0.60 +0.2
727,235 + CCNA_00669 0.60 -2.0
727,257 + CCNA_00669 0.61 -2.8
727,265 - CCNA_00669 0.62 -1.9
727,334 - CCNA_00669 0.64 -0.8
727,341 + CCNA_00669 0.65 -1.0
727,341 + CCNA_00669 0.65 -0.7
727,341 + CCNA_00669 0.65 -1.9
727,341 + CCNA_00669 0.65 -1.7
727,341 + CCNA_00669 0.65 -1.8
727,349 - CCNA_00669 0.65 -0.3
727,349 - CCNA_00669 0.65 -0.5
727,349 - CCNA_00669 0.65 -2.4
727,349 - CCNA_00669 0.65 -0.5
727,364 + CCNA_00669 0.66 -1.2
727,372 - CCNA_00669 0.66 -0.8
727,372 - CCNA_00669 0.66 -0.9
727,372 - CCNA_00669 0.66 -0.7
727,389 - CCNA_00669 0.67 -1.6
727,405 - CCNA_00669 0.67 -0.5
727,431 + CCNA_00669 0.68 -0.7
727,439 - CCNA_00669 0.69 -1.4
727,457 - CCNA_00669 0.69 -1.2
727,468 + CCNA_00669 0.70 -2.4
727,473 + CCNA_00669 0.70 -1.0
727,478 + CCNA_00669 0.70 -1.7
727,481 - CCNA_00669 0.70 -0.8
727,486 - CCNA_00669 0.71 -1.2
727,486 - CCNA_00669 0.71 -1.1
727,494 + CCNA_00669 0.71 -1.8
727,528 + CCNA_00669 0.72 -1.2
727,529 + CCNA_00669 0.72 -0.8
727,595 + CCNA_00669 0.75 -0.1
727,598 - CCNA_00669 0.75 -1.4
727,634 + CCNA_00669 0.77 -1.7
727,634 + CCNA_00669 0.77 -2.7
727,642 - CCNA_00669 0.77 -2.4
727,642 - CCNA_00669 0.77 -0.8
727,642 - CCNA_00669 0.77 -0.8
727,642 - CCNA_00669 0.77 -1.6
727,642 - CCNA_00669 0.77 -0.9
727,662 - CCNA_00669 0.78 -2.2
727,677 - CCNA_00669 0.78 -0.6
727,835 + CCNA_00669 0.85 +0.6
727,835 + CCNA_00669 0.85 -0.1
727,836 + CCNA_00669 0.85 +1.3
727,837 + CCNA_00669 0.85 -1.8
727,860 + CCNA_00669 0.86 -1.1
727,870 + CCNA_00669 0.86 -1.3
727,878 - CCNA_00669 0.87 -0.9
727,938 + CCNA_00669 0.89 -0.7
727,938 + CCNA_00669 0.89 -1.2
727,946 - CCNA_00669 0.89 -0.8
727,989 - -1.2
727,993 + -0.5
728,001 - -0.4
728,006 - -1.3
728,012 + -0.8
728,020 - -0.6
728,022 + -0.2
728,023 + -1.2
728,023 + +0.9
728,029 + -1.3
728,031 - -1.4
728,031 - -1.1
728,067 + -1.2
728,067 + +0.3
728,075 - -0.4
728,075 - -1.5
728,075 - +0.3
728,077 + -2.0
728,123 + -0.3
728,123 + +0.4
728,123 + +1.1
728,123 + +0.0
728,131 - -0.2
728,131 - +0.2
728,131 - +0.2
728,131 - -1.0
728,167 + -1.1
728,187 - -1.3
728,187 - -1.3
728,234 - -0.5
728,236 + +0.9
728,244 - -3.0
728,310 + CCNA_00670 0.14 -1.9
728,318 - CCNA_00670 0.15 -4.6
728,324 - CCNA_00670 0.16 -3.8
728,565 - CCNA_00670 0.48 -1.7
728,606 - CCNA_00670 0.54 -2.0
728,624 - CCNA_00670 0.56 -1.8
728,936 + -0.9
728,960 + -0.1
728,968 - -0.0
729,782 + -0.1
729,782 + +2.3
729,782 + -0.7
729,799 + +0.3
729,807 - -0.4
729,817 - +0.6
729,837 - -0.2
729,837 - -0.3
729,850 + +0.9
729,855 + +0.3
729,922 + +1.0
729,926 + +1.9
729,927 + +1.9
729,927 + -0.4
729,927 + +0.3
729,933 + -1.3
729,935 - +0.3
729,941 - +1.9

Or see this region's nucleotide sequence