Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS20230

Experiment: Uridine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS20220 and BWI76_RS20225 are separated by 11 nucleotidesBWI76_RS20225 and BWI76_RS20230 are separated by 86 nucleotidesBWI76_RS20230 and BWI76_RS20235 are separated by 336 nucleotides BWI76_RS20220: BWI76_RS20220 - sugar phosphatase, at 4,238,333 to 4,238,992 _RS20220 BWI76_RS20225: BWI76_RS20225 - hypothetical protein, at 4,239,004 to 4,239,498 _RS20225 BWI76_RS20230: BWI76_RS20230 - hypothetical protein, at 4,239,585 to 4,240,040 _RS20230 BWI76_RS20235: BWI76_RS20235 - acetate kinase, at 4,240,377 to 4,241,579 _RS20235 Position (kb) 4239 4240 4241Strain fitness (log2 ratio) -2 -1 0 1at 4238.720 kb on - strand, within BWI76_RS20220at 4238.738 kb on - strand, within BWI76_RS20220at 4238.979 kb on + strandat 4238.979 kb on + strandat 4238.979 kb on + strandat 4238.979 kb on + strandat 4238.987 kb on - strandat 4239.045 kb on - strandat 4239.045 kb on - strandat 4239.226 kb on + strand, within BWI76_RS20225at 4239.369 kb on + strand, within BWI76_RS20225at 4239.469 kb on + strandat 4239.516 kb on + strandat 4239.637 kb on - strand, within BWI76_RS20230at 4239.643 kb on + strand, within BWI76_RS20230at 4240.035 kb on + strandat 4240.164 kb on - strandat 4240.747 kb on + strand, within BWI76_RS20235

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
remove
4,238,720 - BWI76_RS20220 0.59 +0.3
4,238,738 - BWI76_RS20220 0.61 -0.2
4,238,979 + -0.4
4,238,979 + -0.4
4,238,979 + -2.1
4,238,979 + +0.8
4,238,987 - -0.5
4,239,045 - -0.7
4,239,045 - -1.4
4,239,226 + BWI76_RS20225 0.45 +0.2
4,239,369 + BWI76_RS20225 0.74 +0.3
4,239,469 + -0.2
4,239,516 + +1.5
4,239,637 - BWI76_RS20230 0.11 -1.0
4,239,643 + BWI76_RS20230 0.13 -1.9
4,240,035 + -0.6
4,240,164 - -2.1
4,240,747 + BWI76_RS20235 0.31 +0.9

Or see this region's nucleotide sequence