Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19380

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19370 and BWI76_RS19375 are separated by 148 nucleotidesBWI76_RS19375 and BWI76_RS19380 overlap by 4 nucleotidesBWI76_RS19380 and BWI76_RS19385 are separated by 363 nucleotides BWI76_RS19370: BWI76_RS19370 - fructose-bisphosphate aldolase, at 4,037,528 to 4,038,580 _RS19370 BWI76_RS19375: BWI76_RS19375 - bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 4,038,729 to 4,039,529 _RS19375 BWI76_RS19380: BWI76_RS19380 - hydroxyethylthiazole kinase, at 4,039,526 to 4,040,299 _RS19380 BWI76_RS19385: BWI76_RS19385 - MBL fold hydrolase, at 4,040,663 to 4,042,639 _RS19385 Position (kb) 4039 4040 4041Strain fitness (log2 ratio) -1 0 1 2at 4038.645 kb on + strandat 4038.645 kb on + strandat 4038.645 kb on + strandat 4038.645 kb on + strandat 4038.653 kb on - strandat 4038.653 kb on - strandat 4038.818 kb on - strand, within BWI76_RS19375at 4038.976 kb on - strand, within BWI76_RS19375at 4039.044 kb on + strand, within BWI76_RS19375at 4039.493 kb on - strandat 4039.865 kb on + strand, within BWI76_RS19380at 4039.906 kb on - strand, within BWI76_RS19380at 4040.019 kb on + strand, within BWI76_RS19380at 4040.225 kb on + strandat 4040.298 kb on - strandat 4040.406 kb on + strandat 4040.496 kb on + strandat 4040.496 kb on + strandat 4040.504 kb on - strandat 4040.504 kb on - strandat 4040.514 kb on - strandat 4040.867 kb on - strand, within BWI76_RS19385

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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4,038,645 + -0.0
4,038,645 + +0.5
4,038,645 + -0.2
4,038,645 + +0.1
4,038,653 - +0.5
4,038,653 - -0.5
4,038,818 - BWI76_RS19375 0.11 +1.1
4,038,976 - BWI76_RS19375 0.31 +0.4
4,039,044 + BWI76_RS19375 0.39 -0.6
4,039,493 - +0.3
4,039,865 + BWI76_RS19380 0.44 +0.8
4,039,906 - BWI76_RS19380 0.49 +0.2
4,040,019 + BWI76_RS19380 0.64 +0.3
4,040,225 + +0.1
4,040,298 - -0.2
4,040,406 + +0.1
4,040,496 + +0.4
4,040,496 + -0.4
4,040,504 - +2.4
4,040,504 - +0.4
4,040,514 - -0.4
4,040,867 - BWI76_RS19385 0.10 -0.5

Or see this region's nucleotide sequence