Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16705

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16700 and BWI76_RS16705 are separated by 74 nucleotidesBWI76_RS16705 and BWI76_RS16710 are separated by 496 nucleotidesBWI76_RS16710 and BWI76_RS16715 are separated by 66 nucleotides BWI76_RS16700: BWI76_RS16700 - ABC transporter ATP-binding protein, at 3,456,522 to 3,457,487 _RS16700 BWI76_RS16705: BWI76_RS16705 - glucose dehydrogenase, at 3,457,562 to 3,459,967 _RS16705 BWI76_RS16710: BWI76_RS16710 - cyclic nucleotide-binding protein, at 3,460,464 to 3,460,693 _RS16710 BWI76_RS16715: BWI76_RS16715 - hypothetical protein, at 3,460,760 to 3,461,668 _RS16715 Position (kb) 3457 3458 3459 3460Strain fitness (log2 ratio) -2 -1 0 1 2at 3457.530 kb on - strandat 3457.580 kb on + strandat 3457.772 kb on + strandat 3457.901 kb on - strand, within BWI76_RS16705at 3458.352 kb on + strand, within BWI76_RS16705at 3458.675 kb on - strand, within BWI76_RS16705at 3458.739 kb on + strand, within BWI76_RS16705at 3459.124 kb on + strand, within BWI76_RS16705at 3459.688 kb on + strand, within BWI76_RS16705at 3459.771 kb on - strandat 3459.803 kb on - strandat 3459.847 kb on - strandat 3460.060 kb on - strandat 3460.072 kb on + strandat 3460.072 kb on + strandat 3460.072 kb on + strandat 3460.072 kb on + strandat 3460.072 kb on + strandat 3460.072 kb on + strandat 3460.080 kb on - strandat 3460.080 kb on - strandat 3460.080 kb on - strandat 3460.080 kb on - strandat 3460.252 kb on + strandat 3460.258 kb on - strandat 3460.354 kb on + strandat 3460.391 kb on - strandat 3460.416 kb on + strandat 3460.419 kb on + strandat 3460.424 kb on - strandat 3460.424 kb on - strandat 3460.470 kb on - strandat 3460.481 kb on - strandat 3460.520 kb on + strand, within BWI76_RS16710at 3460.528 kb on - strandat 3460.637 kb on - strand, within BWI76_RS16710at 3460.647 kb on + strand, within BWI76_RS16710at 3460.647 kb on + strand, within BWI76_RS16710at 3460.647 kb on + strand, within BWI76_RS16710at 3460.647 kb on + strand, within BWI76_RS16710at 3460.647 kb on + strand, within BWI76_RS16710at 3460.647 kb on + strand, within BWI76_RS16710at 3460.647 kb on + strand, within BWI76_RS16710at 3460.647 kb on + strand, within BWI76_RS16710at 3460.655 kb on - strand, within BWI76_RS16710at 3460.655 kb on - strand, within BWI76_RS16710at 3460.655 kb on - strand, within BWI76_RS16710at 3460.655 kb on - strand, within BWI76_RS16710at 3460.655 kb on - strand, within BWI76_RS16710at 3460.655 kb on - strand, within BWI76_RS16710at 3460.655 kb on - strand, within BWI76_RS16710at 3460.655 kb on - strand, within BWI76_RS16710at 3460.655 kb on - strand, within BWI76_RS16710at 3460.655 kb on - strand, within BWI76_RS16710at 3460.655 kb on - strand, within BWI76_RS16710at 3460.664 kb on - strandat 3460.693 kb on + strandat 3460.698 kb on + strandat 3460.698 kb on + strandat 3460.698 kb on + strandat 3460.698 kb on + strandat 3460.698 kb on + strandat 3460.725 kb on + strandat 3460.728 kb on - strandat 3460.733 kb on - strandat 3460.812 kb on - strandat 3460.813 kb on - strandat 3460.821 kb on - strandat 3460.830 kb on - strandat 3460.831 kb on - strandat 3460.831 kb on - strandat 3460.863 kb on + strandat 3460.871 kb on - strand, within BWI76_RS16715at 3460.871 kb on - strand, within BWI76_RS16715at 3460.871 kb on - strand, within BWI76_RS16715at 3460.881 kb on - strand, within BWI76_RS16715at 3460.920 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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3,457,530 - -0.2
3,457,580 + +0.4
3,457,772 + +1.1
3,457,901 - BWI76_RS16705 0.14 +1.3
3,458,352 + BWI76_RS16705 0.33 +1.0
3,458,675 - BWI76_RS16705 0.46 +1.1
3,458,739 + BWI76_RS16705 0.49 +0.1
3,459,124 + BWI76_RS16705 0.65 +0.7
3,459,688 + BWI76_RS16705 0.88 -0.1
3,459,771 - -0.9
3,459,803 - +0.4
3,459,847 - +0.8
3,460,060 - -0.7
3,460,072 + -0.2
3,460,072 + +0.5
3,460,072 + -2.6
3,460,072 + -0.8
3,460,072 + -0.9
3,460,072 + -0.5
3,460,080 - -1.2
3,460,080 - -0.0
3,460,080 - +0.5
3,460,080 - -1.7
3,460,252 + +0.6
3,460,258 - -1.5
3,460,354 + -1.6
3,460,391 - -1.3
3,460,416 + -0.6
3,460,419 + -2.0
3,460,424 - +0.8
3,460,424 - +0.5
3,460,470 - -0.7
3,460,481 - +0.2
3,460,520 + BWI76_RS16710 0.24 -1.9
3,460,528 - +0.8
3,460,637 - BWI76_RS16710 0.75 +0.6
3,460,647 + BWI76_RS16710 0.80 +0.5
3,460,647 + BWI76_RS16710 0.80 -1.3
3,460,647 + BWI76_RS16710 0.80 -2.0
3,460,647 + BWI76_RS16710 0.80 -1.7
3,460,647 + BWI76_RS16710 0.80 -0.1
3,460,647 + BWI76_RS16710 0.80 +0.9
3,460,647 + BWI76_RS16710 0.80 +1.1
3,460,647 + BWI76_RS16710 0.80 +0.5
3,460,655 - BWI76_RS16710 0.83 -0.6
3,460,655 - BWI76_RS16710 0.83 +0.6
3,460,655 - BWI76_RS16710 0.83 +2.7
3,460,655 - BWI76_RS16710 0.83 -2.6
3,460,655 - BWI76_RS16710 0.83 -1.0
3,460,655 - BWI76_RS16710 0.83 +0.2
3,460,655 - BWI76_RS16710 0.83 +0.3
3,460,655 - BWI76_RS16710 0.83 +0.3
3,460,655 - BWI76_RS16710 0.83 +0.7
3,460,655 - BWI76_RS16710 0.83 +1.8
3,460,655 - BWI76_RS16710 0.83 -0.3
3,460,664 - -0.5
3,460,693 + -1.0
3,460,698 + +0.4
3,460,698 + -0.4
3,460,698 + +0.8
3,460,698 + +0.3
3,460,698 + +1.4
3,460,725 + -1.9
3,460,728 - +0.7
3,460,733 - -0.3
3,460,812 - +1.7
3,460,813 - +0.4
3,460,821 - +0.6
3,460,830 - -0.8
3,460,831 - -0.3
3,460,831 - +2.6
3,460,863 + -1.2
3,460,871 - BWI76_RS16715 0.12 +0.3
3,460,871 - BWI76_RS16715 0.12 +0.3
3,460,871 - BWI76_RS16715 0.12 +0.1
3,460,881 - BWI76_RS16715 0.13 +0.1
3,460,920 + -0.2

Or see this region's nucleotide sequence