Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04555 and BWI76_RS04560 are separated by 168 nucleotides BWI76_RS04560 and BWI76_RS04565 are separated by 81 nucleotides BWI76_RS04565 and BWI76_RS04570 are separated by 12 nucleotides
BWI76_RS04555: BWI76_RS04555 - citrate/acetate antiporter, at 943,966 to 945,321
_RS04555
BWI76_RS04560: BWI76_RS04560 - holo-ACP synthase CitX, at 945,490 to 946,029
_RS04560
BWI76_RS04565: BWI76_RS04565 - bifunctional tRNA pseudouridine(32) synthase/ribosomal large subunit pseudouridine synthase RluA, at 946,111 to 946,770
_RS04565
BWI76_RS04570: BWI76_RS04570 - RNA polymerase-associated protein RapA, at 946,783 to 949,689
_RS04570
Position (kb) 945
946
947 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 944.665 kb on - strand, within BWI76_RS04555 at 944.872 kb on - strand, within BWI76_RS04555 at 944.905 kb on + strand, within BWI76_RS04555 at 944.910 kb on + strand, within BWI76_RS04555 at 944.910 kb on + strand, within BWI76_RS04555 at 944.919 kb on + strand, within BWI76_RS04555 at 944.970 kb on - strand, within BWI76_RS04555 at 944.983 kb on + strand, within BWI76_RS04555 at 944.991 kb on - strand, within BWI76_RS04555 at 944.991 kb on - strand, within BWI76_RS04555 at 944.991 kb on - strand, within BWI76_RS04555 at 945.058 kb on - strand, within BWI76_RS04555 at 945.058 kb on - strand, within BWI76_RS04555 at 945.072 kb on + strand, within BWI76_RS04555 at 945.187 kb on - strand at 945.525 kb on - strand at 945.626 kb on - strand, within BWI76_RS04560 at 945.644 kb on + strand, within BWI76_RS04560 at 945.773 kb on - strand, within BWI76_RS04560 at 945.809 kb on - strand, within BWI76_RS04560 at 946.053 kb on - strand at 946.098 kb on - strand at 946.108 kb on - strand at 946.342 kb on + strand, within BWI76_RS04565 at 946.398 kb on + strand, within BWI76_RS04565 at 946.407 kb on + strand, within BWI76_RS04565 at 946.474 kb on - strand, within BWI76_RS04565 at 946.543 kb on + strand, within BWI76_RS04565 at 946.554 kb on + strand, within BWI76_RS04565
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 944,665 - BWI76_RS04555 0.52 -0.3 944,872 - BWI76_RS04555 0.67 +0.1 944,905 + BWI76_RS04555 0.69 -1.9 944,910 + BWI76_RS04555 0.70 -3.5 944,910 + BWI76_RS04555 0.70 -0.4 944,919 + BWI76_RS04555 0.70 -0.3 944,970 - BWI76_RS04555 0.74 +0.3 944,983 + BWI76_RS04555 0.75 +0.3 944,991 - BWI76_RS04555 0.76 +0.4 944,991 - BWI76_RS04555 0.76 +1.1 944,991 - BWI76_RS04555 0.76 -0.3 945,058 - BWI76_RS04555 0.81 +0.4 945,058 - BWI76_RS04555 0.81 -0.1 945,072 + BWI76_RS04555 0.82 +0.2 945,187 - -0.5 945,525 - -0.0 945,626 - BWI76_RS04560 0.25 -0.4 945,644 + BWI76_RS04560 0.29 -0.8 945,773 - BWI76_RS04560 0.52 -1.7 945,809 - BWI76_RS04560 0.59 -2.3 946,053 - +0.8 946,098 - +1.0 946,108 - -4.2 946,342 + BWI76_RS04565 0.35 -1.1 946,398 + BWI76_RS04565 0.43 -0.6 946,407 + BWI76_RS04565 0.45 -1.1 946,474 - BWI76_RS04565 0.55 -0.5 946,543 + BWI76_RS04565 0.65 -0.8 946,554 + BWI76_RS04565 0.67 -0.7
Or see this region's nucleotide sequence