Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS04295

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS04285 and BWI76_RS04290 are separated by 88 nucleotidesBWI76_RS04290 and BWI76_RS04295 are separated by 27 nucleotidesBWI76_RS04295 and BWI76_RS04300 are separated by 385 nucleotides BWI76_RS04285: BWI76_RS04285 - hypothetical protein, at 882,857 to 883,423 _RS04285 BWI76_RS04290: BWI76_RS04290 - hypothetical protein, at 883,512 to 884,261 _RS04290 BWI76_RS04295: BWI76_RS04295 - hypothetical protein, at 884,289 to 884,693 _RS04295 BWI76_RS04300: BWI76_RS04300 - molecular chaperone DnaK, at 885,079 to 886,995 _RS04300 Position (kb) 884 885Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 883.318 kb on + strand, within BWI76_RS04285at 883.350 kb on - strand, within BWI76_RS04285at 883.365 kb on - strand, within BWI76_RS04285at 883.393 kb on - strandat 883.408 kb on + strandat 883.416 kb on - strandat 883.472 kb on - strandat 883.510 kb on + strandat 883.574 kb on + strandat 883.582 kb on - strandat 883.582 kb on - strandat 883.590 kb on + strand, within BWI76_RS04290at 883.636 kb on + strand, within BWI76_RS04290at 883.644 kb on - strand, within BWI76_RS04290at 883.676 kb on + strand, within BWI76_RS04290at 883.771 kb on + strand, within BWI76_RS04290at 883.775 kb on + strand, within BWI76_RS04290at 883.778 kb on - strand, within BWI76_RS04290at 883.779 kb on - strand, within BWI76_RS04290at 883.789 kb on - strand, within BWI76_RS04290at 883.808 kb on + strand, within BWI76_RS04290at 883.814 kb on + strand, within BWI76_RS04290at 883.915 kb on - strand, within BWI76_RS04290at 883.977 kb on - strand, within BWI76_RS04290at 884.012 kb on + strand, within BWI76_RS04290at 884.046 kb on + strand, within BWI76_RS04290at 884.054 kb on - strand, within BWI76_RS04290at 884.054 kb on - strand, within BWI76_RS04290at 884.062 kb on + strand, within BWI76_RS04290at 884.112 kb on - strand, within BWI76_RS04290at 884.112 kb on - strand, within BWI76_RS04290at 884.127 kb on + strand, within BWI76_RS04290at 884.133 kb on - strand, within BWI76_RS04290at 884.135 kb on - strand, within BWI76_RS04290at 884.138 kb on + strand, within BWI76_RS04290at 884.138 kb on + strand, within BWI76_RS04290at 884.140 kb on + strand, within BWI76_RS04290at 884.140 kb on + strand, within BWI76_RS04290at 884.140 kb on + strand, within BWI76_RS04290at 884.140 kb on + strand, within BWI76_RS04290at 884.146 kb on - strand, within BWI76_RS04290at 884.148 kb on - strand, within BWI76_RS04290at 884.148 kb on - strand, within BWI76_RS04290at 884.148 kb on - strand, within BWI76_RS04290at 884.148 kb on - strand, within BWI76_RS04290at 884.148 kb on - strand, within BWI76_RS04290at 884.151 kb on + strand, within BWI76_RS04290at 884.185 kb on - strand, within BWI76_RS04290at 884.227 kb on - strandat 884.227 kb on - strandat 884.231 kb on + strandat 884.239 kb on - strandat 884.239 kb on - strandat 884.239 kb on - strandat 884.286 kb on + strandat 884.294 kb on - strandat 884.321 kb on + strandat 884.321 kb on + strandat 884.321 kb on + strandat 884.321 kb on + strandat 884.321 kb on + strandat 884.321 kb on + strandat 884.321 kb on + strandat 884.321 kb on + strandat 884.323 kb on + strandat 884.329 kb on - strandat 884.329 kb on - strandat 884.329 kb on - strandat 884.329 kb on - strandat 884.329 kb on - strandat 884.329 kb on - strandat 884.329 kb on - strandat 884.329 kb on - strandat 884.329 kb on - strandat 884.329 kb on - strandat 884.330 kb on + strand, within BWI76_RS04295at 884.330 kb on + strand, within BWI76_RS04295at 884.330 kb on + strand, within BWI76_RS04295at 884.330 kb on + strand, within BWI76_RS04295at 884.330 kb on + strand, within BWI76_RS04295at 884.330 kb on + strand, within BWI76_RS04295at 884.330 kb on + strand, within BWI76_RS04295at 884.330 kb on + strand, within BWI76_RS04295at 884.330 kb on + strand, within BWI76_RS04295at 884.331 kb on - strandat 884.338 kb on - strand, within BWI76_RS04295at 884.338 kb on - strand, within BWI76_RS04295at 884.338 kb on - strand, within BWI76_RS04295at 884.338 kb on - strand, within BWI76_RS04295at 884.338 kb on - strand, within BWI76_RS04295at 884.338 kb on - strand, within BWI76_RS04295at 884.338 kb on - strand, within BWI76_RS04295at 884.338 kb on - strand, within BWI76_RS04295at 884.338 kb on - strand, within BWI76_RS04295at 884.338 kb on - strand, within BWI76_RS04295at 884.338 kb on - strand, within BWI76_RS04295at 884.338 kb on - strand, within BWI76_RS04295at 884.370 kb on + strandat 884.380 kb on + strand, within BWI76_RS04295at 884.382 kb on - strand, within BWI76_RS04295at 884.395 kb on + strand, within BWI76_RS04295at 884.397 kb on - strand, within BWI76_RS04295at 884.397 kb on - strand, within BWI76_RS04295at 884.397 kb on - strand, within BWI76_RS04295at 884.397 kb on - strand, within BWI76_RS04295at 884.419 kb on - strand, within BWI76_RS04295at 884.423 kb on + strand, within BWI76_RS04295at 884.431 kb on + strand, within BWI76_RS04295at 884.431 kb on - strand, within BWI76_RS04295at 884.431 kb on - strand, within BWI76_RS04295at 884.431 kb on - strand, within BWI76_RS04295at 884.443 kb on + strand, within BWI76_RS04295at 884.443 kb on + strand, within BWI76_RS04295at 884.443 kb on + strand, within BWI76_RS04295at 884.447 kb on + strand, within BWI76_RS04295at 884.447 kb on + strand, within BWI76_RS04295at 884.447 kb on + strand, within BWI76_RS04295at 884.448 kb on + strand, within BWI76_RS04295at 884.448 kb on + strand, within BWI76_RS04295at 884.453 kb on + strand, within BWI76_RS04295at 884.455 kb on - strand, within BWI76_RS04295at 884.455 kb on - strand, within BWI76_RS04295at 884.455 kb on - strand, within BWI76_RS04295at 884.455 kb on - strand, within BWI76_RS04295at 884.455 kb on - strand, within BWI76_RS04295at 884.455 kb on - strand, within BWI76_RS04295at 884.456 kb on - strand, within BWI76_RS04295at 884.456 kb on - strand, within BWI76_RS04295at 884.456 kb on - strand, within BWI76_RS04295at 884.456 kb on - strand, within BWI76_RS04295at 884.463 kb on + strand, within BWI76_RS04295at 884.463 kb on + strand, within BWI76_RS04295at 884.466 kb on - strand, within BWI76_RS04295at 884.466 kb on - strand, within BWI76_RS04295at 884.471 kb on - strand, within BWI76_RS04295at 884.475 kb on + strand, within BWI76_RS04295at 884.476 kb on + strand, within BWI76_RS04295at 884.479 kb on - strand, within BWI76_RS04295at 884.526 kb on - strandat 884.526 kb on - strand, within BWI76_RS04295at 884.526 kb on - strand, within BWI76_RS04295at 884.558 kb on + strand, within BWI76_RS04295at 884.558 kb on + strand, within BWI76_RS04295at 884.558 kb on + strand, within BWI76_RS04295at 884.559 kb on + strand, within BWI76_RS04295at 884.566 kb on - strand, within BWI76_RS04295at 884.566 kb on - strand, within BWI76_RS04295at 884.566 kb on - strand, within BWI76_RS04295at 884.566 kb on - strand, within BWI76_RS04295at 884.566 kb on - strand, within BWI76_RS04295at 884.566 kb on - strand, within BWI76_RS04295at 884.566 kb on - strand, within BWI76_RS04295at 884.566 kb on - strand, within BWI76_RS04295at 884.566 kb on - strand, within BWI76_RS04295at 884.566 kb on - strand, within BWI76_RS04295at 884.566 kb on - strand, within BWI76_RS04295at 884.566 kb on - strand, within BWI76_RS04295at 884.566 kb on - strand, within BWI76_RS04295at 884.572 kb on - strand, within BWI76_RS04295at 884.572 kb on - strand, within BWI76_RS04295at 884.572 kb on - strand, within BWI76_RS04295at 884.603 kb on - strand, within BWI76_RS04295at 884.603 kb on - strand, within BWI76_RS04295at 884.612 kb on - strand, within BWI76_RS04295at 884.630 kb on + strand, within BWI76_RS04295at 884.635 kb on + strand, within BWI76_RS04295at 884.640 kb on + strand, within BWI76_RS04295at 884.640 kb on + strand, within BWI76_RS04295at 884.640 kb on + strand, within BWI76_RS04295at 884.640 kb on + strand, within BWI76_RS04295at 884.640 kb on + strand, within BWI76_RS04295at 884.640 kb on + strand, within BWI76_RS04295at 884.640 kb on + strand, within BWI76_RS04295at 884.648 kb on - strand, within BWI76_RS04295at 884.648 kb on - strand, within BWI76_RS04295at 884.648 kb on - strand, within BWI76_RS04295at 884.648 kb on - strand, within BWI76_RS04295at 884.652 kb on + strand, within BWI76_RS04295at 884.653 kb on + strandat 884.658 kb on - strandat 884.658 kb on - strandat 884.829 kb on + strandat 884.837 kb on - strandat 884.856 kb on + strandat 884.863 kb on + strandat 884.863 kb on + strandat 884.868 kb on + strandat 884.876 kb on + strandat 884.876 kb on - strandat 884.879 kb on + strandat 884.879 kb on + strandat 884.881 kb on + strandat 884.881 kb on + strandat 884.881 kb on + strandat 884.881 kb on + strandat 884.881 kb on + strandat 884.881 kb on + strandat 884.881 kb on + strandat 884.881 kb on + strandat 884.881 kb on + strandat 884.881 kb on + strandat 884.887 kb on - strandat 884.889 kb on - strandat 884.889 kb on - strandat 884.889 kb on - strandat 884.889 kb on - strandat 884.889 kb on - strandat 884.889 kb on - strandat 884.889 kb on - strandat 884.889 kb on - strandat 884.889 kb on - strandat 884.889 kb on - strandat 884.889 kb on - strandat 884.889 kb on - strandat 884.899 kb on - strandat 884.936 kb on + strandat 884.936 kb on + strandat 884.944 kb on - strandat 884.944 kb on - strandat 884.948 kb on + strandat 884.954 kb on - strandat 884.957 kb on - strandat 884.972 kb on + strandat 884.994 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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883,318 + BWI76_RS04285 0.81 -2.8
883,350 - BWI76_RS04285 0.87 +0.1
883,365 - BWI76_RS04285 0.90 +0.6
883,393 - +0.5
883,408 + -0.2
883,416 - +0.3
883,472 - -1.3
883,510 + -0.0
883,574 + +0.0
883,582 - +0.7
883,582 - -2.2
883,590 + BWI76_RS04290 0.10 +0.3
883,636 + BWI76_RS04290 0.17 +0.4
883,644 - BWI76_RS04290 0.18 -0.1
883,676 + BWI76_RS04290 0.22 +0.2
883,771 + BWI76_RS04290 0.35 +0.3
883,775 + BWI76_RS04290 0.35 -1.6
883,778 - BWI76_RS04290 0.35 -0.7
883,779 - BWI76_RS04290 0.36 +0.1
883,789 - BWI76_RS04290 0.37 -0.6
883,808 + BWI76_RS04290 0.39 +0.6
883,814 + BWI76_RS04290 0.40 -1.2
883,915 - BWI76_RS04290 0.54 +0.0
883,977 - BWI76_RS04290 0.62 -1.0
884,012 + BWI76_RS04290 0.67 -1.2
884,046 + BWI76_RS04290 0.71 +3.9
884,054 - BWI76_RS04290 0.72 +0.0
884,054 - BWI76_RS04290 0.72 +1.6
884,062 + BWI76_RS04290 0.73 +0.2
884,112 - BWI76_RS04290 0.80 -0.3
884,112 - BWI76_RS04290 0.80 +0.6
884,127 + BWI76_RS04290 0.82 +0.4
884,133 - BWI76_RS04290 0.83 -2.4
884,135 - BWI76_RS04290 0.83 -2.0
884,138 + BWI76_RS04290 0.83 -0.2
884,138 + BWI76_RS04290 0.83 -2.0
884,140 + BWI76_RS04290 0.84 +1.1
884,140 + BWI76_RS04290 0.84 -1.1
884,140 + BWI76_RS04290 0.84 -1.1
884,140 + BWI76_RS04290 0.84 -0.1
884,146 - BWI76_RS04290 0.85 -1.5
884,148 - BWI76_RS04290 0.85 -0.2
884,148 - BWI76_RS04290 0.85 +2.5
884,148 - BWI76_RS04290 0.85 -0.3
884,148 - BWI76_RS04290 0.85 -1.9
884,148 - BWI76_RS04290 0.85 -0.3
884,151 + BWI76_RS04290 0.85 +0.5
884,185 - BWI76_RS04290 0.90 +0.9
884,227 - +0.1
884,227 - -0.5
884,231 + +0.8
884,239 - +1.0
884,239 - -2.0
884,239 - -0.2
884,286 + -1.3
884,294 - -0.5
884,321 + +0.5
884,321 + +0.8
884,321 + -0.5
884,321 + +0.4
884,321 + +0.5
884,321 + -1.1
884,321 + +0.0
884,321 + +1.2
884,323 + -0.4
884,329 - +0.1
884,329 - +1.1
884,329 - -0.2
884,329 - +0.4
884,329 - -0.5
884,329 - -2.7
884,329 - -0.0
884,329 - -1.2
884,329 - -2.8
884,329 - -0.3
884,330 + BWI76_RS04295 0.10 +0.1
884,330 + BWI76_RS04295 0.10 +1.0
884,330 + BWI76_RS04295 0.10 -1.5
884,330 + BWI76_RS04295 0.10 -2.3
884,330 + BWI76_RS04295 0.10 +0.9
884,330 + BWI76_RS04295 0.10 +1.0
884,330 + BWI76_RS04295 0.10 -0.4
884,330 + BWI76_RS04295 0.10 -2.9
884,330 + BWI76_RS04295 0.10 +0.8
884,331 - +1.3
884,338 - BWI76_RS04295 0.12 -0.1
884,338 - BWI76_RS04295 0.12 +0.6
884,338 - BWI76_RS04295 0.12 +0.8
884,338 - BWI76_RS04295 0.12 -0.1
884,338 - BWI76_RS04295 0.12 +0.2
884,338 - BWI76_RS04295 0.12 +1.1
884,338 - BWI76_RS04295 0.12 -0.5
884,338 - BWI76_RS04295 0.12 -2.5
884,338 - BWI76_RS04295 0.12 -0.6
884,338 - BWI76_RS04295 0.12 +0.6
884,338 - BWI76_RS04295 0.12 -0.3
884,338 - BWI76_RS04295 0.12 +0.3
884,370 + -0.9
884,380 + BWI76_RS04295 0.22 -3.1
884,382 - BWI76_RS04295 0.23 -0.5
884,395 + BWI76_RS04295 0.26 +0.8
884,397 - BWI76_RS04295 0.27 -0.4
884,397 - BWI76_RS04295 0.27 +0.2
884,397 - BWI76_RS04295 0.27 -1.3
884,397 - BWI76_RS04295 0.27 +0.2
884,419 - BWI76_RS04295 0.32 -0.5
884,423 + BWI76_RS04295 0.33 -1.1
884,431 + BWI76_RS04295 0.35 -0.3
884,431 - BWI76_RS04295 0.35 -2.5
884,431 - BWI76_RS04295 0.35 -0.3
884,431 - BWI76_RS04295 0.35 -0.0
884,443 + BWI76_RS04295 0.38 -3.3
884,443 + BWI76_RS04295 0.38 -0.5
884,443 + BWI76_RS04295 0.38 -0.9
884,447 + BWI76_RS04295 0.39 -1.9
884,447 + BWI76_RS04295 0.39 -2.8
884,447 + BWI76_RS04295 0.39 -1.0
884,448 + BWI76_RS04295 0.39 +0.9
884,448 + BWI76_RS04295 0.39 -2.3
884,453 + BWI76_RS04295 0.40 +1.1
884,455 - BWI76_RS04295 0.41 +0.9
884,455 - BWI76_RS04295 0.41 -2.4
884,455 - BWI76_RS04295 0.41 +0.0
884,455 - BWI76_RS04295 0.41 -2.2
884,455 - BWI76_RS04295 0.41 +0.5
884,455 - BWI76_RS04295 0.41 +0.8
884,456 - BWI76_RS04295 0.41 -0.4
884,456 - BWI76_RS04295 0.41 +0.0
884,456 - BWI76_RS04295 0.41 -0.3
884,456 - BWI76_RS04295 0.41 -0.9
884,463 + BWI76_RS04295 0.43 -0.5
884,463 + BWI76_RS04295 0.43 +0.2
884,466 - BWI76_RS04295 0.44 -1.9
884,466 - BWI76_RS04295 0.44 -1.1
884,471 - BWI76_RS04295 0.45 -2.0
884,475 + BWI76_RS04295 0.46 -2.3
884,476 + BWI76_RS04295 0.46 -2.4
884,479 - BWI76_RS04295 0.47 -0.1
884,526 - +2.1
884,526 - BWI76_RS04295 0.59 +0.0
884,526 - BWI76_RS04295 0.59 +0.2
884,558 + BWI76_RS04295 0.66 +1.1
884,558 + BWI76_RS04295 0.66 -1.4
884,558 + BWI76_RS04295 0.66 +0.2
884,559 + BWI76_RS04295 0.67 -3.0
884,566 - BWI76_RS04295 0.68 +1.3
884,566 - BWI76_RS04295 0.68 -0.3
884,566 - BWI76_RS04295 0.68 -1.6
884,566 - BWI76_RS04295 0.68 +1.0
884,566 - BWI76_RS04295 0.68 -0.1
884,566 - BWI76_RS04295 0.68 +0.6
884,566 - BWI76_RS04295 0.68 -0.2
884,566 - BWI76_RS04295 0.68 -0.1
884,566 - BWI76_RS04295 0.68 -0.4
884,566 - BWI76_RS04295 0.68 -1.1
884,566 - BWI76_RS04295 0.68 +1.4
884,566 - BWI76_RS04295 0.68 -3.2
884,566 - BWI76_RS04295 0.68 -0.5
884,572 - BWI76_RS04295 0.70 +1.2
884,572 - BWI76_RS04295 0.70 -0.8
884,572 - BWI76_RS04295 0.70 -2.0
884,603 - BWI76_RS04295 0.78 -0.4
884,603 - BWI76_RS04295 0.78 +0.5
884,612 - BWI76_RS04295 0.80 -0.2
884,630 + BWI76_RS04295 0.84 -0.5
884,635 + BWI76_RS04295 0.85 -1.2
884,640 + BWI76_RS04295 0.87 -0.6
884,640 + BWI76_RS04295 0.87 -1.3
884,640 + BWI76_RS04295 0.87 -1.8
884,640 + BWI76_RS04295 0.87 -1.1
884,640 + BWI76_RS04295 0.87 +0.1
884,640 + BWI76_RS04295 0.87 -0.6
884,640 + BWI76_RS04295 0.87 +2.0
884,648 - BWI76_RS04295 0.89 -0.2
884,648 - BWI76_RS04295 0.89 -2.3
884,648 - BWI76_RS04295 0.89 -3.4
884,648 - BWI76_RS04295 0.89 -0.2
884,652 + BWI76_RS04295 0.90 -0.5
884,653 + -0.1
884,658 - -3.9
884,658 - -1.7
884,829 + +0.1
884,837 - -0.9
884,856 + +2.1
884,863 + -1.4
884,863 + -0.0
884,868 + -0.2
884,876 + -0.5
884,876 - +1.0
884,879 + +0.3
884,879 + -0.1
884,881 + -0.2
884,881 + -0.1
884,881 + +0.8
884,881 + +0.9
884,881 + -0.3
884,881 + +0.4
884,881 + -0.8
884,881 + +0.6
884,881 + +0.4
884,881 + -2.6
884,887 - -1.3
884,889 - +0.2
884,889 - -0.0
884,889 - +0.3
884,889 - +0.3
884,889 - -0.2
884,889 - -0.7
884,889 - +1.2
884,889 - +1.9
884,889 - -1.6
884,889 - -0.3
884,889 - +2.8
884,889 - +0.1
884,899 - +2.1
884,936 + -0.5
884,936 + -1.0
884,944 - +0.8
884,944 - -0.6
884,948 + -0.4
884,954 - +0.7
884,957 - -0.2
884,972 + +0.7
884,994 + +0.4

Or see this region's nucleotide sequence