Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS03530

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS03525 and BWI76_RS03530 are separated by 206 nucleotidesBWI76_RS03530 and BWI76_RS03535 are separated by 138 nucleotides BWI76_RS03525: BWI76_RS03525 - tryptophanyl-tRNA synthetase, at 731,456 to 732,463 _RS03525 BWI76_RS03530: BWI76_RS03530 - tryptophan permease, at 732,670 to 733,926 _RS03530 BWI76_RS03535: BWI76_RS03535 - Tryptophanase (EC 4.1.99.1) (from data), at 734,065 to 735,453 _RS03535 Position (kb) 732 733 734Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 731.709 kb on + strand, within BWI76_RS03525at 731.745 kb on + strand, within BWI76_RS03525at 731.920 kb on - strand, within BWI76_RS03525at 731.929 kb on + strand, within BWI76_RS03525at 732.106 kb on - strand, within BWI76_RS03525at 732.437 kb on + strandat 732.532 kb on + strandat 732.532 kb on + strandat 732.579 kb on + strandat 732.690 kb on + strandat 732.690 kb on + strandat 732.698 kb on - strandat 732.798 kb on - strand, within BWI76_RS03530at 732.822 kb on - strand, within BWI76_RS03530at 732.839 kb on - strand, within BWI76_RS03530at 732.901 kb on - strand, within BWI76_RS03530at 732.949 kb on - strand, within BWI76_RS03530at 733.002 kb on + strand, within BWI76_RS03530at 733.067 kb on - strand, within BWI76_RS03530at 733.087 kb on - strand, within BWI76_RS03530at 733.099 kb on + strand, within BWI76_RS03530at 733.208 kb on + strand, within BWI76_RS03530at 733.339 kb on + strand, within BWI76_RS03530at 733.339 kb on + strand, within BWI76_RS03530at 733.359 kb on + strand, within BWI76_RS03530at 733.404 kb on - strand, within BWI76_RS03530at 733.444 kb on + strand, within BWI76_RS03530at 733.491 kb on + strand, within BWI76_RS03530at 733.491 kb on + strand, within BWI76_RS03530at 733.499 kb on - strand, within BWI76_RS03530at 733.516 kb on + strand, within BWI76_RS03530at 733.524 kb on - strand, within BWI76_RS03530at 733.534 kb on + strand, within BWI76_RS03530at 733.538 kb on + strand, within BWI76_RS03530at 733.542 kb on - strand, within BWI76_RS03530at 733.575 kb on + strand, within BWI76_RS03530at 733.583 kb on - strand, within BWI76_RS03530at 733.614 kb on - strand, within BWI76_RS03530at 733.615 kb on + strand, within BWI76_RS03530at 733.619 kb on - strand, within BWI76_RS03530at 733.675 kb on - strand, within BWI76_RS03530at 733.686 kb on + strand, within BWI76_RS03530at 733.694 kb on - strand, within BWI76_RS03530at 733.694 kb on - strand, within BWI76_RS03530at 733.731 kb on + strand, within BWI76_RS03530at 733.732 kb on + strand, within BWI76_RS03530at 733.732 kb on + strand, within BWI76_RS03530at 733.739 kb on - strand, within BWI76_RS03530at 733.742 kb on + strand, within BWI76_RS03530at 733.751 kb on + strand, within BWI76_RS03530at 733.752 kb on - strand, within BWI76_RS03530at 733.763 kb on + strand, within BWI76_RS03530at 733.769 kb on - strand, within BWI76_RS03530at 733.772 kb on + strand, within BWI76_RS03530at 733.774 kb on + strand, within BWI76_RS03530at 733.884 kb on + strandat 733.886 kb on - strandat 733.892 kb on - strandat 733.892 kb on - strandat 733.922 kb on + strandat 733.922 kb on + strandat 733.922 kb on + strandat 733.923 kb on + strandat 733.930 kb on - strandat 733.930 kb on - strandat 733.952 kb on - strandat 733.954 kb on - strandat 733.955 kb on - strandat 733.977 kb on + strandat 733.979 kb on - strandat 733.992 kb on + strandat 733.992 kb on + strandat 734.000 kb on - strandat 734.000 kb on - strandat 734.000 kb on - strandat 734.006 kb on + strandat 734.013 kb on - strandat 734.058 kb on - strandat 734.083 kb on - strandat 734.084 kb on - strandat 734.098 kb on + strandat 734.098 kb on + strandat 734.098 kb on + strandat 734.098 kb on + strandat 734.098 kb on + strandat 734.098 kb on + strandat 734.098 kb on + strandat 734.098 kb on + strandat 734.106 kb on - strandat 734.106 kb on - strandat 734.106 kb on - strandat 734.106 kb on - strandat 734.111 kb on - strandat 734.111 kb on - strandat 734.113 kb on - strandat 734.113 kb on - strandat 734.120 kb on - strandat 734.120 kb on - strandat 734.127 kb on - strandat 734.132 kb on + strandat 734.140 kb on - strandat 734.140 kb on - strandat 734.154 kb on + strandat 734.154 kb on + strandat 734.162 kb on - strandat 734.162 kb on - strandat 734.162 kb on - strandat 734.162 kb on - strandat 734.200 kb on + strandat 734.230 kb on + strand, within BWI76_RS03535at 734.361 kb on + strand, within BWI76_RS03535at 734.449 kb on + strand, within BWI76_RS03535at 734.503 kb on - strand, within BWI76_RS03535at 734.557 kb on - strand, within BWI76_RS03535at 734.609 kb on + strand, within BWI76_RS03535at 734.639 kb on - strand, within BWI76_RS03535at 734.644 kb on - strand, within BWI76_RS03535at 734.686 kb on + strand, within BWI76_RS03535at 734.691 kb on + strand, within BWI76_RS03535at 734.691 kb on + strand, within BWI76_RS03535at 734.691 kb on + strand, within BWI76_RS03535at 734.691 kb on + strand, within BWI76_RS03535at 734.691 kb on + strand, within BWI76_RS03535at 734.691 kb on + strand, within BWI76_RS03535at 734.694 kb on - strand, within BWI76_RS03535at 734.694 kb on - strand, within BWI76_RS03535at 734.699 kb on - strand, within BWI76_RS03535at 734.699 kb on - strand, within BWI76_RS03535at 734.699 kb on - strand, within BWI76_RS03535at 734.706 kb on + strand, within BWI76_RS03535at 734.744 kb on + strand, within BWI76_RS03535at 734.752 kb on - strand, within BWI76_RS03535at 734.752 kb on - strand, within BWI76_RS03535at 734.763 kb on + strand, within BWI76_RS03535at 734.836 kb on + strand, within BWI76_RS03535at 734.842 kb on - strand, within BWI76_RS03535at 734.844 kb on - strand, within BWI76_RS03535at 734.885 kb on + strand, within BWI76_RS03535at 734.887 kb on + strand, within BWI76_RS03535at 734.893 kb on + strand, within BWI76_RS03535

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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731,709 + BWI76_RS03525 0.25 -2.9
731,745 + BWI76_RS03525 0.29 -0.3
731,920 - BWI76_RS03525 0.46 +0.3
731,929 + BWI76_RS03525 0.47 -1.7
732,106 - BWI76_RS03525 0.64 +0.2
732,437 + +0.9
732,532 + +1.0
732,532 + -2.2
732,579 + +0.8
732,690 + +0.1
732,690 + +0.5
732,698 - +0.0
732,798 - BWI76_RS03530 0.10 -0.5
732,822 - BWI76_RS03530 0.12 +0.1
732,839 - BWI76_RS03530 0.13 -2.6
732,901 - BWI76_RS03530 0.18 +0.9
732,949 - BWI76_RS03530 0.22 -0.9
733,002 + BWI76_RS03530 0.26 +1.0
733,067 - BWI76_RS03530 0.32 +0.1
733,087 - BWI76_RS03530 0.33 -1.0
733,099 + BWI76_RS03530 0.34 +0.1
733,208 + BWI76_RS03530 0.43 +0.3
733,339 + BWI76_RS03530 0.53 +0.3
733,339 + BWI76_RS03530 0.53 -0.5
733,359 + BWI76_RS03530 0.55 +0.5
733,404 - BWI76_RS03530 0.58 -1.2
733,444 + BWI76_RS03530 0.62 -0.3
733,491 + BWI76_RS03530 0.65 +0.2
733,491 + BWI76_RS03530 0.65 -1.4
733,499 - BWI76_RS03530 0.66 +0.0
733,516 + BWI76_RS03530 0.67 +0.7
733,524 - BWI76_RS03530 0.68 -1.6
733,534 + BWI76_RS03530 0.69 +0.7
733,538 + BWI76_RS03530 0.69 +0.0
733,542 - BWI76_RS03530 0.69 +0.1
733,575 + BWI76_RS03530 0.72 +0.4
733,583 - BWI76_RS03530 0.73 +0.7
733,614 - BWI76_RS03530 0.75 +0.6
733,615 + BWI76_RS03530 0.75 -3.6
733,619 - BWI76_RS03530 0.75 -1.5
733,675 - BWI76_RS03530 0.80 +0.4
733,686 + BWI76_RS03530 0.81 -0.1
733,694 - BWI76_RS03530 0.81 +0.5
733,694 - BWI76_RS03530 0.81 -2.6
733,731 + BWI76_RS03530 0.84 -1.6
733,732 + BWI76_RS03530 0.84 +1.0
733,732 + BWI76_RS03530 0.84 -0.5
733,739 - BWI76_RS03530 0.85 +0.3
733,742 + BWI76_RS03530 0.85 +0.7
733,751 + BWI76_RS03530 0.86 -0.6
733,752 - BWI76_RS03530 0.86 -1.0
733,763 + BWI76_RS03530 0.87 -1.0
733,769 - BWI76_RS03530 0.87 -0.1
733,772 + BWI76_RS03530 0.88 -2.5
733,774 + BWI76_RS03530 0.88 -0.2
733,884 + -1.4
733,886 - +0.4
733,892 - -1.3
733,892 - -1.5
733,922 + -1.2
733,922 + +0.1
733,922 + -2.6
733,923 + -0.0
733,930 - -0.2
733,930 - +0.6
733,952 - +0.3
733,954 - -0.5
733,955 - -0.1
733,977 + -0.1
733,979 - +0.1
733,992 + -0.0
733,992 + +0.3
734,000 - +0.1
734,000 - +0.3
734,000 - -0.3
734,006 + -1.4
734,013 - +0.2
734,058 - +1.0
734,083 - +0.3
734,084 - +0.2
734,098 + -1.5
734,098 + -1.4
734,098 + +1.8
734,098 + +0.4
734,098 + -0.6
734,098 + -2.3
734,098 + +0.0
734,098 + +0.7
734,106 - -1.4
734,106 - -2.5
734,106 - +0.3
734,106 - -0.1
734,111 - -1.2
734,111 - -0.5
734,113 - -0.4
734,113 - -1.0
734,120 - -0.0
734,120 - -0.6
734,127 - -3.2
734,132 + -0.6
734,140 - +0.2
734,140 - -0.3
734,154 + +0.6
734,154 + -0.6
734,162 - +0.5
734,162 - +1.7
734,162 - -1.9
734,162 - +1.2
734,200 + +0.7
734,230 + BWI76_RS03535 0.12 +0.1
734,361 + BWI76_RS03535 0.21 -1.2
734,449 + BWI76_RS03535 0.28 +0.4
734,503 - BWI76_RS03535 0.32 +0.4
734,557 - BWI76_RS03535 0.35 -0.1
734,609 + BWI76_RS03535 0.39 +0.2
734,639 - BWI76_RS03535 0.41 +0.2
734,644 - BWI76_RS03535 0.42 +0.2
734,686 + BWI76_RS03535 0.45 +0.1
734,691 + BWI76_RS03535 0.45 +2.5
734,691 + BWI76_RS03535 0.45 -2.4
734,691 + BWI76_RS03535 0.45 +1.5
734,691 + BWI76_RS03535 0.45 -1.0
734,691 + BWI76_RS03535 0.45 -0.9
734,691 + BWI76_RS03535 0.45 -0.7
734,694 - BWI76_RS03535 0.45 +0.0
734,694 - BWI76_RS03535 0.45 +0.3
734,699 - BWI76_RS03535 0.46 +0.1
734,699 - BWI76_RS03535 0.46 -2.1
734,699 - BWI76_RS03535 0.46 -2.7
734,706 + BWI76_RS03535 0.46 -0.0
734,744 + BWI76_RS03535 0.49 -3.0
734,752 - BWI76_RS03535 0.49 +0.2
734,752 - BWI76_RS03535 0.49 +0.2
734,763 + BWI76_RS03535 0.50 +0.4
734,836 + BWI76_RS03535 0.56 -0.4
734,842 - BWI76_RS03535 0.56 +0.3
734,844 - BWI76_RS03535 0.56 -0.3
734,885 + BWI76_RS03535 0.59 -0.0
734,887 + BWI76_RS03535 0.59 -2.2
734,893 + BWI76_RS03535 0.60 +1.4

Or see this region's nucleotide sequence