Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3117

Experiment: L-Methionine and L-Threonine as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3116 and DvMF_3117 are separated by 167 nucleotidesDvMF_3117 and DvMF_3118 are separated by 3 nucleotides DvMF_3116: DvMF_3116 - methyl-accepting chemotaxis sensory transducer with Cache sensor (RefSeq), at 3,932,496 to 3,934,916 _3116 DvMF_3117: DvMF_3117 - hypothetical protein (RefSeq), at 3,935,084 to 3,935,626 _3117 DvMF_3118: DvMF_3118 - Gamma-glutamyltransferase (RefSeq), at 3,935,630 to 3,937,249 _3118 Position (kb) 3935 3936Strain fitness (log2 ratio) -1 0 1at 3934.104 kb on - strand, within DvMF_3116at 3934.132 kb on - strand, within DvMF_3116at 3934.351 kb on + strand, within DvMF_3116at 3934.359 kb on - strand, within DvMF_3116at 3934.359 kb on - strand, within DvMF_3116at 3934.387 kb on + strand, within DvMF_3116at 3934.477 kb on + strand, within DvMF_3116at 3934.697 kb on + strandat 3934.870 kb on + strandat 3934.922 kb on + strandat 3935.003 kb on + strandat 3935.104 kb on + strandat 3935.312 kb on - strand, within DvMF_3117at 3935.662 kb on + strandat 3935.719 kb on - strandat 3936.037 kb on + strand, within DvMF_3118at 3936.314 kb on - strand, within DvMF_3118at 3936.541 kb on - strand, within DvMF_3118

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine and L-Threonine as nutrient
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3,934,104 - DvMF_3116 0.66 +0.0
3,934,132 - DvMF_3116 0.68 -0.5
3,934,351 + DvMF_3116 0.77 +0.3
3,934,359 - DvMF_3116 0.77 +0.4
3,934,359 - DvMF_3116 0.77 -0.1
3,934,387 + DvMF_3116 0.78 +0.4
3,934,477 + DvMF_3116 0.82 +0.5
3,934,697 + +1.4
3,934,870 + -0.1
3,934,922 + +0.0
3,935,003 + +0.4
3,935,104 + +0.6
3,935,312 - DvMF_3117 0.42 +0.7
3,935,662 + +0.5
3,935,719 - +0.9
3,936,037 + DvMF_3118 0.25 +0.6
3,936,314 - DvMF_3118 0.42 +0.8
3,936,541 - DvMF_3118 0.56 -0.4

Or see this region's nucleotide sequence