Experiment: L-Methionine and L-Threonine as nutrient
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2880 and DvMF_2881 overlap by 59 nucleotides DvMF_2881 and DvMF_2882 overlap by 4 nucleotides DvMF_2882 and rplS are separated by 276 nucleotides rplS and DvMF_2884 are separated by 55 nucleotides
DvMF_2880: DvMF_2880 - Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase (RefSeq), at 3,637,895 to 3,638,734
_2880
DvMF_2881: DvMF_2881 - protein of unknown function UPF0102 (RefSeq), at 3,638,676 to 3,639,116
_2881
DvMF_2882: DvMF_2882 - Ribonuclease H (RefSeq), at 3,639,113 to 3,639,991
_2882
DvMF_2883: rplS - 50S ribosomal protein L19 (RefSeq), at 3,640,268 to 3,640,615
rplS
DvMF_2884: DvMF_2884 - tRNA (guanine-N1)-methyltransferase (RefSeq), at 3,640,671 to 3,641,966
_2884
Position (kb)
3639
3640 Strain fitness (log2 ratio)
-1
0
1 at 3638.184 kb on + strand, within DvMF_2880 at 3638.188 kb on + strand, within DvMF_2880 at 3638.217 kb on + strand, within DvMF_2880 at 3638.274 kb on - strand, within DvMF_2880 at 3638.368 kb on - strand, within DvMF_2880 at 3638.378 kb on - strand, within DvMF_2880 at 3638.413 kb on + strand, within DvMF_2880 at 3638.546 kb on - strand, within DvMF_2880 at 3638.707 kb on + strand at 3638.740 kb on - strand, within DvMF_2881 at 3638.766 kb on + strand, within DvMF_2881 at 3638.869 kb on - strand, within DvMF_2881 at 3638.913 kb on + strand, within DvMF_2881 at 3639.120 kb on + strand at 3639.215 kb on - strand, within DvMF_2882 at 3639.232 kb on - strand, within DvMF_2882 at 3639.279 kb on + strand, within DvMF_2882 at 3639.282 kb on - strand, within DvMF_2882 at 3639.356 kb on - strand, within DvMF_2882
Per-strain Table
Position Strand Gene LocusTag Fraction L-Methionine and L-Threonine as nutrient remove 3,638,184 + DvMF_2880 0.34 +0.0 3,638,188 + DvMF_2880 0.35 +0.7 3,638,217 + DvMF_2880 0.38 +0.1 3,638,274 - DvMF_2880 0.45 +1.0 3,638,368 - DvMF_2880 0.56 +0.7 3,638,378 - DvMF_2880 0.57 +0.4 3,638,413 + DvMF_2880 0.62 +0.1 3,638,546 - DvMF_2880 0.78 +0.3 3,638,707 + +1.3 3,638,740 - DvMF_2881 0.15 +0.3 3,638,766 + DvMF_2881 0.20 +0.6 3,638,869 - DvMF_2881 0.44 +1.4 3,638,913 + DvMF_2881 0.54 +0.7 3,639,120 + +1.6 3,639,215 - DvMF_2882 0.12 +0.2 3,639,232 - DvMF_2882 0.14 -0.6 3,639,279 + DvMF_2882 0.19 +0.8 3,639,282 - DvMF_2882 0.19 +0.4 3,639,356 - DvMF_2882 0.28 +0.0
Or see this region's nucleotide sequence