Experiment: L-Methionine and L-Threonine as nutrient
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2030 and DvMF_2031 are separated by 586 nucleotides DvMF_2031 and DvMF_2032 are separated by 143 nucleotides DvMF_2032 and DvMF_2033 overlap by 1 nucleotides
DvMF_2030: DvMF_2030 - MerR family transcriptional regulator (RefSeq), at 2,514,765 to 2,515,484
_2030
DvMF_2031: DvMF_2031 - ribonucleotide-diphosphate reductase subunit alpha (RefSeq), at 2,516,071 to 2,518,383
_2031
DvMF_2032: DvMF_2032 - cell division ATP-binding protein FtsE (RefSeq), at 2,518,527 to 2,519,369
_2032
DvMF_2033: DvMF_2033 - protein of unknown function DUF214 (RefSeq), at 2,519,369 to 2,520,271
_2033
Position (kb)
2516
2517
2518
2519 Strain fitness (log2 ratio)
-1
0
1 at 2515.197 kb on + strand, within DvMF_2030 at 2515.212 kb on - strand, within DvMF_2030 at 2515.432 kb on + strand at 2515.595 kb on + strand at 2515.901 kb on + strand at 2516.004 kb on - strand at 2516.130 kb on - strand at 2516.140 kb on - strand at 2516.226 kb on + strand at 2516.234 kb on - strand at 2516.296 kb on + strand at 2516.351 kb on + strand, within DvMF_2031 at 2516.359 kb on - strand, within DvMF_2031 at 2516.397 kb on - strand, within DvMF_2031 at 2516.399 kb on + strand, within DvMF_2031 at 2516.482 kb on + strand, within DvMF_2031 at 2516.519 kb on - strand, within DvMF_2031 at 2516.543 kb on - strand, within DvMF_2031 at 2516.549 kb on + strand, within DvMF_2031 at 2516.598 kb on + strand, within DvMF_2031 at 2516.802 kb on - strand, within DvMF_2031 at 2516.809 kb on + strand, within DvMF_2031 at 2517.049 kb on - strand, within DvMF_2031 at 2517.160 kb on - strand, within DvMF_2031 at 2517.432 kb on + strand, within DvMF_2031 at 2517.587 kb on - strand, within DvMF_2031 at 2517.664 kb on - strand, within DvMF_2031 at 2517.691 kb on - strand, within DvMF_2031 at 2517.720 kb on + strand, within DvMF_2031 at 2517.748 kb on + strand, within DvMF_2031 at 2517.783 kb on + strand, within DvMF_2031 at 2517.990 kb on - strand, within DvMF_2031 at 2518.212 kb on + strand at 2518.299 kb on - strand at 2518.312 kb on - strand at 2518.321 kb on + strand at 2518.383 kb on + strand at 2518.391 kb on - strand at 2518.391 kb on - strand at 2518.391 kb on - strand at 2518.391 kb on - strand at 2518.486 kb on - strand at 2518.510 kb on + strand at 2518.512 kb on - strand at 2518.667 kb on + strand, within DvMF_2032 at 2518.686 kb on - strand, within DvMF_2032 at 2518.854 kb on - strand, within DvMF_2032 at 2519.077 kb on - strand, within DvMF_2032 at 2519.077 kb on - strand, within DvMF_2032 at 2519.139 kb on - strand, within DvMF_2032 at 2519.221 kb on + strand, within DvMF_2032
Per-strain Table
Position Strand Gene LocusTag Fraction L-Methionine and L-Threonine as nutrient remove 2,515,197 + DvMF_2030 0.60 +0.1 2,515,212 - DvMF_2030 0.62 +0.3 2,515,432 + +0.1 2,515,595 + -0.1 2,515,901 + +0.9 2,516,004 - +0.9 2,516,130 - +1.6 2,516,140 - +0.3 2,516,226 + +0.3 2,516,234 - +0.1 2,516,296 + +0.4 2,516,351 + DvMF_2031 0.12 +0.8 2,516,359 - DvMF_2031 0.12 +0.6 2,516,397 - DvMF_2031 0.14 +0.2 2,516,399 + DvMF_2031 0.14 -0.9 2,516,482 + DvMF_2031 0.18 +0.4 2,516,519 - DvMF_2031 0.19 +0.9 2,516,543 - DvMF_2031 0.20 +0.3 2,516,549 + DvMF_2031 0.21 -0.2 2,516,598 + DvMF_2031 0.23 +0.3 2,516,802 - DvMF_2031 0.32 +0.4 2,516,809 + DvMF_2031 0.32 +0.9 2,517,049 - DvMF_2031 0.42 +0.3 2,517,160 - DvMF_2031 0.47 +0.4 2,517,432 + DvMF_2031 0.59 +0.1 2,517,587 - DvMF_2031 0.66 +0.4 2,517,664 - DvMF_2031 0.69 +1.6 2,517,691 - DvMF_2031 0.70 +0.7 2,517,720 + DvMF_2031 0.71 +0.3 2,517,748 + DvMF_2031 0.73 +0.6 2,517,783 + DvMF_2031 0.74 +0.8 2,517,990 - DvMF_2031 0.83 +0.6 2,518,212 + +0.6 2,518,299 - +0.3 2,518,312 - +0.0 2,518,321 + +0.7 2,518,383 + +0.5 2,518,391 - +0.8 2,518,391 - -0.0 2,518,391 - -0.8 2,518,391 - +0.7 2,518,486 - +0.4 2,518,510 + +0.9 2,518,512 - +0.7 2,518,667 + DvMF_2032 0.17 +0.7 2,518,686 - DvMF_2032 0.19 +0.4 2,518,854 - DvMF_2032 0.39 +0.2 2,519,077 - DvMF_2032 0.65 +0.3 2,519,077 - DvMF_2032 0.65 +1.0 2,519,139 - DvMF_2032 0.73 +0.3 2,519,221 + DvMF_2032 0.82 +0.5
Or see this region's nucleotide sequence