Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1961

Experiment: L-Methionine and L-Threonine as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1961 and DvMF_1962 are separated by 3 nucleotides DvMF_1961: DvMF_1961 - polysaccharide deacetylase (RefSeq), at 2,423,918 to 2,424,913 _1961 DvMF_1962: DvMF_1962 - shikimate 5-dehydrogenase (RefSeq), at 2,424,917 to 2,425,864 _1962 Position (kb) 2423 2424 2425Strain fitness (log2 ratio) -1 0 1at 2422.953 kb on - strandat 2423.170 kb on + strandat 2423.349 kb on + strandat 2423.394 kb on + strandat 2423.484 kb on + strandat 2423.493 kb on - strandat 2423.627 kb on + strandat 2423.637 kb on + strandat 2423.637 kb on + strandat 2423.637 kb on + strandat 2423.724 kb on - strandat 2423.808 kb on + strandat 2423.896 kb on - strandat 2424.214 kb on + strand, within DvMF_1961at 2424.248 kb on - strand, within DvMF_1961at 2424.538 kb on + strand, within DvMF_1961at 2424.553 kb on - strand, within DvMF_1961at 2424.760 kb on - strand, within DvMF_1961at 2424.990 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine and L-Threonine as nutrient
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2,422,953 - -0.0
2,423,170 + +1.1
2,423,349 + +0.6
2,423,394 + +0.6
2,423,484 + +0.4
2,423,493 - +0.6
2,423,627 + +1.3
2,423,637 + +1.0
2,423,637 + +0.6
2,423,637 + +0.3
2,423,724 - +1.1
2,423,808 + -0.1
2,423,896 - +0.2
2,424,214 + DvMF_1961 0.30 +0.2
2,424,248 - DvMF_1961 0.33 +1.0
2,424,538 + DvMF_1961 0.62 +0.4
2,424,553 - DvMF_1961 0.64 +0.4
2,424,760 - DvMF_1961 0.85 +0.6
2,424,990 - +0.4

Or see this region's nucleotide sequence