Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1421

Experiment: L-Methionine and L-Threonine as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1420 and DvMF_1421 are separated by 285 nucleotidesDvMF_1421 and DvMF_1422 are separated by 131 nucleotides DvMF_1420: DvMF_1420 - MltA domain protein (RefSeq), at 1,737,018 to 1,738,172 _1420 DvMF_1421: DvMF_1421 - thioesterase superfamily protein (RefSeq), at 1,738,458 to 1,738,868 _1421 DvMF_1422: DvMF_1422 - amidohydrolase 2 (RefSeq), at 1,739,000 to 1,739,821 _1422 Position (kb) 1738 1739Strain fitness (log2 ratio) -1 0 1at 1737.487 kb on + strand, within DvMF_1420at 1737.659 kb on + strand, within DvMF_1420at 1737.667 kb on - strand, within DvMF_1420at 1737.685 kb on + strand, within DvMF_1420at 1737.815 kb on - strand, within DvMF_1420at 1737.828 kb on + strand, within DvMF_1420at 1737.871 kb on - strand, within DvMF_1420at 1738.260 kb on - strandat 1738.353 kb on + strandat 1738.366 kb on + strandat 1738.387 kb on + strandat 1738.439 kb on + strandat 1738.578 kb on + strand, within DvMF_1421at 1738.978 kb on - strandat 1739.153 kb on + strand, within DvMF_1422at 1739.156 kb on - strand, within DvMF_1422at 1739.673 kb on + strand, within DvMF_1422at 1739.782 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine and L-Threonine as nutrient
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1,737,487 + DvMF_1420 0.41 +0.7
1,737,659 + DvMF_1420 0.55 +1.7
1,737,667 - DvMF_1420 0.56 +0.6
1,737,685 + DvMF_1420 0.58 +0.4
1,737,815 - DvMF_1420 0.69 +0.1
1,737,828 + DvMF_1420 0.70 +1.1
1,737,871 - DvMF_1420 0.74 +0.2
1,738,260 - +0.1
1,738,353 + +0.9
1,738,366 + -0.7
1,738,387 + +0.7
1,738,439 + +0.4
1,738,578 + DvMF_1421 0.29 +0.5
1,738,978 - +0.5
1,739,153 + DvMF_1422 0.19 +0.3
1,739,156 - DvMF_1422 0.19 +0.5
1,739,673 + DvMF_1422 0.82 -1.1
1,739,782 - +0.7

Or see this region's nucleotide sequence