Experiment: L-Methionine and L-Threonine as nutrient
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0645 and DvMF_0646 are separated by 744 nucleotides DvMF_0646 and DvMF_0647 are separated by 53 nucleotides DvMF_0647 and DvMF_0648 are separated by 75 nucleotides
DvMF_0645: DvMF_0645 - formate dehydrogenase accessory protein (RefSeq), at 774,920 to 775,933
_0645
DvMF_0646: DvMF_0646 - formate dehydrogenase, alpha subunit (RefSeq), at 776,678 to 779,719
_0646
DvMF_0647: DvMF_0647 - formate dehydrogenase beta subunit (RefSeq), at 779,773 to 780,432
_0647
DvMF_0648: DvMF_0648 - formate dehydrogenase accessory protein (RefSeq), at 780,508 to 781,473
_0648
Position (kb) 776
777
778
779
780 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 775.680 kb on + strand, within DvMF_0645 at 775.680 kb on + strand, within DvMF_0645 at 775.868 kb on - strand at 776.504 kb on + strand at 776.656 kb on + strand at 776.707 kb on + strand at 776.955 kb on - strand at 776.980 kb on + strand at 777.029 kb on + strand, within DvMF_0646 at 777.116 kb on + strand, within DvMF_0646 at 777.118 kb on - strand, within DvMF_0646 at 777.596 kb on + strand, within DvMF_0646 at 777.648 kb on + strand, within DvMF_0646 at 777.656 kb on - strand, within DvMF_0646 at 777.883 kb on + strand, within DvMF_0646 at 778.011 kb on + strand, within DvMF_0646 at 778.028 kb on + strand, within DvMF_0646 at 778.111 kb on - strand, within DvMF_0646 at 778.395 kb on - strand, within DvMF_0646 at 778.668 kb on - strand, within DvMF_0646 at 778.754 kb on - strand, within DvMF_0646 at 778.915 kb on + strand, within DvMF_0646 at 778.941 kb on + strand, within DvMF_0646 at 778.994 kb on + strand, within DvMF_0646 at 779.011 kb on + strand, within DvMF_0646 at 779.399 kb on + strand, within DvMF_0646 at 779.409 kb on + strand, within DvMF_0646 at 779.521 kb on + strand at 779.564 kb on + strand at 779.745 kb on - strand at 779.753 kb on - strand at 780.045 kb on - strand, within DvMF_0647 at 780.168 kb on + strand, within DvMF_0647 at 780.168 kb on + strand, within DvMF_0647 at 780.176 kb on - strand, within DvMF_0647 at 780.707 kb on - strand, within DvMF_0648
Per-strain Table
Position Strand Gene LocusTag Fraction L-Methionine and L-Threonine as nutrient remove 775,680 + DvMF_0645 0.75 +0.5 775,680 + DvMF_0645 0.75 -0.1 775,868 - +1.2 776,504 + +0.6 776,656 + -3.9 776,707 + +0.9 776,955 - +0.5 776,980 + +0.7 777,029 + DvMF_0646 0.12 +0.5 777,116 + DvMF_0646 0.14 -0.4 777,118 - DvMF_0646 0.14 +0.2 777,596 + DvMF_0646 0.30 +0.9 777,648 + DvMF_0646 0.32 -0.7 777,656 - DvMF_0646 0.32 -0.8 777,883 + DvMF_0646 0.40 +0.3 778,011 + DvMF_0646 0.44 +0.5 778,028 + DvMF_0646 0.44 -0.5 778,111 - DvMF_0646 0.47 +0.4 778,395 - DvMF_0646 0.56 +0.9 778,668 - DvMF_0646 0.65 +0.3 778,754 - DvMF_0646 0.68 -0.1 778,915 + DvMF_0646 0.74 -0.1 778,941 + DvMF_0646 0.74 -0.1 778,994 + DvMF_0646 0.76 -0.9 779,011 + DvMF_0646 0.77 +0.5 779,399 + DvMF_0646 0.89 +0.3 779,409 + DvMF_0646 0.90 +0.7 779,521 + +0.4 779,564 + +1.2 779,745 - +0.3 779,753 - +1.6 780,045 - DvMF_0647 0.41 +0.2 780,168 + DvMF_0647 0.60 +1.2 780,168 + DvMF_0647 0.60 +0.4 780,176 - DvMF_0647 0.61 -0.1 780,707 - DvMF_0648 0.21 +0.2
Or see this region's nucleotide sequence