Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0188

Experiment: L-Methionine and L-Threonine as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0186 and DvMF_0187 are separated by 174 nucleotidesDvMF_0187 and glpX are separated by 235 nucleotidesglpX and purU are separated by 376 nucleotides DvMF_0186: DvMF_0186 - hypothetical protein (RefSeq), at 203,460 to 203,807 _0186 DvMF_0187: DvMF_0187 - hypothetical protein (RefSeq), at 203,982 to 204,512 _0187 DvMF_0188: glpX - fructose 1,6-bisphosphatase II (RefSeq), at 204,748 to 205,731 glpX DvMF_0189: purU - formyltetrahydrofolate deformylase (RefSeq), at 206,108 to 206,962 purU Position (kb) 204 205 206Strain fitness (log2 ratio) -1 0 1 2at 203.783 kb on + strandat 203.951 kb on - strandat 204.129 kb on - strand, within DvMF_0187at 204.306 kb on - strand, within DvMF_0187at 204.404 kb on - strand, within DvMF_0187at 204.413 kb on + strand, within DvMF_0187at 204.525 kb on + strandat 204.626 kb on - strandat 206.239 kb on + strand, within purUat 206.320 kb on + strand, within purUat 206.328 kb on - strand, within purUat 206.339 kb on + strand, within purUat 206.347 kb on - strand, within purUat 206.414 kb on - strand, within purUat 206.461 kb on - strand, within purU

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine and L-Threonine as nutrient
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203,783 + +0.2
203,951 - +0.8
204,129 - DvMF_0187 0.28 +0.7
204,306 - DvMF_0187 0.61 +0.5
204,404 - DvMF_0187 0.79 +0.6
204,413 + DvMF_0187 0.81 +0.6
204,525 + +0.7
204,626 - +2.0
206,239 + purU DvMF_0189 0.15 +0.3
206,320 + purU DvMF_0189 0.25 +0.7
206,328 - purU DvMF_0189 0.26 +0.4
206,339 + purU DvMF_0189 0.27 +1.1
206,347 - purU DvMF_0189 0.28 +2.0
206,414 - purU DvMF_0189 0.36 +0.8
206,461 - purU DvMF_0189 0.41 +0.6

Or see this region's nucleotide sequence