Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0138

Experiment: L-Methionine and L-Threonine as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0137 and DvMF_0138 are separated by 262 nucleotidesDvMF_0138 and DvMF_0139 are separated by 10 nucleotides DvMF_0137: DvMF_0137 - UDP-glucose 4-epimerase (RefSeq), at 152,746 to 153,816 _0137 DvMF_0138: DvMF_0138 - lipid-A-disaccharide synthase (RefSeq), at 154,079 to 155,311 _0138 DvMF_0139: DvMF_0139 - nucleoside recognition domain protein (RefSeq), at 155,322 to 156,305 _0139 Position (kb) 154 155 156Strain fitness (log2 ratio) -2 -1 0 1at 153.142 kb on - strand, within DvMF_0137at 153.364 kb on + strand, within DvMF_0137at 153.421 kb on - strand, within DvMF_0137at 153.599 kb on + strand, within DvMF_0137at 153.662 kb on + strand, within DvMF_0137at 153.668 kb on - strand, within DvMF_0137at 153.815 kb on - strandat 156.069 kb on - strand, within DvMF_0139at 156.222 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine and L-Threonine as nutrient
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153,142 - DvMF_0137 0.37 -1.9
153,364 + DvMF_0137 0.58 +0.3
153,421 - DvMF_0137 0.63 -0.3
153,599 + DvMF_0137 0.80 -2.6
153,662 + DvMF_0137 0.86 -1.9
153,668 - DvMF_0137 0.86 -1.3
153,815 - -0.2
156,069 - DvMF_0139 0.76 +0.6
156,222 - -1.1

Or see this region's nucleotide sequence