Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0132

Experiment: L-Methionine and L-Threonine as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0130 and DvMF_0131 are separated by 360 nucleotidesDvMF_0131 and DvMF_0132 are separated by 2 nucleotidesDvMF_0132 and DvMF_0133 are separated by 127 nucleotides DvMF_0130: DvMF_0130 - DNA polymerase III, alpha subunit (RefSeq), at 143,616 to 147,137 _0130 DvMF_0131: DvMF_0131 - hypothetical protein (RefSeq), at 147,498 to 147,839 _0131 DvMF_0132: DvMF_0132 - metal-dependent phosphohydrolase HD region (RefSeq), at 147,842 to 148,711 _0132 DvMF_0133: DvMF_0133 - Methyltransferase type 11 (RefSeq), at 148,839 to 149,576 _0133 Position (kb) 147 148 149Strain fitness (log2 ratio) -1 0 1 2 3at 147.377 kb on + strandat 147.447 kb on + strandat 147.675 kb on + strand, within DvMF_0131at 147.795 kb on - strand, within DvMF_0131at 147.882 kb on - strandat 148.010 kb on + strand, within DvMF_0132at 148.019 kb on + strand, within DvMF_0132at 148.048 kb on - strand, within DvMF_0132at 148.073 kb on - strand, within DvMF_0132at 148.275 kb on + strand, within DvMF_0132at 148.364 kb on + strand, within DvMF_0132at 148.372 kb on - strand, within DvMF_0132at 148.818 kb on + strandat 148.894 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine and L-Threonine as nutrient
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147,377 + +0.9
147,447 + +0.2
147,675 + DvMF_0131 0.52 +0.9
147,795 - DvMF_0131 0.87 +3.0
147,882 - +0.1
148,010 + DvMF_0132 0.19 +0.5
148,019 + DvMF_0132 0.20 +1.7
148,048 - DvMF_0132 0.24 +0.3
148,073 - DvMF_0132 0.27 -0.5
148,275 + DvMF_0132 0.50 +0.4
148,364 + DvMF_0132 0.60 +0.5
148,372 - DvMF_0132 0.61 -0.3
148,818 + +0.3
148,894 - +0.5

Or see this region's nucleotide sequence