Experiment: L-Methionine and L-Threonine as nutrient
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0013 and DvMF_0014 are separated by 654 nucleotides DvMF_0014 and DvMF_0015 are separated by 7 nucleotides DvMF_0015 and DvMF_0016 overlap by 4 nucleotides
DvMF_0013: DvMF_0013 - fructose-1,6-bisphosphate aldolase, class II (RefSeq), at 17,181 to 18,104
_0013
DvMF_0014: DvMF_0014 - hypothetical protein (RefSeq), at 18,759 to 21,203
_0014
DvMF_0015: DvMF_0015 - peptidase C26 (RefSeq), at 21,211 to 21,834
_0015
DvMF_0016: DvMF_0016 - transferase, putative (RefSeq), at 21,831 to 22,622
_0016
Position (kb) 18
19
20
21
22 Strain fitness (log2 ratio) -1
0
1 at 18.305 kb on + strand at 18.576 kb on + strand at 18.707 kb on - strand at 18.715 kb on + strand at 18.810 kb on - strand at 18.817 kb on + strand at 19.087 kb on + strand, within DvMF_0014 at 19.227 kb on - strand, within DvMF_0014 at 19.329 kb on + strand, within DvMF_0014 at 19.369 kb on + strand, within DvMF_0014 at 19.369 kb on + strand, within DvMF_0014 at 19.369 kb on + strand, within DvMF_0014 at 19.369 kb on + strand, within DvMF_0014 at 19.377 kb on - strand, within DvMF_0014 at 19.377 kb on - strand, within DvMF_0014 at 19.469 kb on + strand, within DvMF_0014 at 20.010 kb on - strand, within DvMF_0014 at 20.116 kb on + strand, within DvMF_0014 at 20.276 kb on - strand, within DvMF_0014 at 21.162 kb on + strand at 21.197 kb on - strand at 21.205 kb on - strand at 21.241 kb on - strand at 21.285 kb on - strand, within DvMF_0015 at 21.836 kb on - strand at 22.011 kb on - strand, within DvMF_0016
Per-strain Table
Position Strand Gene LocusTag Fraction L-Methionine and L-Threonine as nutrient remove 18,305 + +0.1 18,576 + +0.2 18,707 - +0.2 18,715 + +0.5 18,810 - +0.1 18,817 + +0.5 19,087 + DvMF_0014 0.13 +0.4 19,227 - DvMF_0014 0.19 +0.5 19,329 + DvMF_0014 0.23 +0.6 19,369 + DvMF_0014 0.25 +1.2 19,369 + DvMF_0014 0.25 +0.2 19,369 + DvMF_0014 0.25 +1.0 19,369 + DvMF_0014 0.25 +0.3 19,377 - DvMF_0014 0.25 +0.5 19,377 - DvMF_0014 0.25 +0.4 19,469 + DvMF_0014 0.29 +0.7 20,010 - DvMF_0014 0.51 +0.3 20,116 + DvMF_0014 0.56 +0.5 20,276 - DvMF_0014 0.62 +0.5 21,162 + +0.4 21,197 - +0.2 21,205 - +1.0 21,241 - +0.6 21,285 - DvMF_0015 0.12 +0.2 21,836 - +0.6 22,011 - DvMF_0016 0.23 -0.9
Or see this region's nucleotide sequence