Experiment: MoLS4 without vitamins with Casaminos 0.05%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0832 and DVU0833 overlap by 59 nucleotides DVU0833 and rnhB overlap by 7 nucleotides
DVU0832: DVU0832 - tetrapyrrole methylase family protein (TIGR), at 922,377 to 923,204
DVU0832
DVU0833: DVU0833 - conserved hypothetical protein TIGR00252 (TIGR), at 923,146 to 923,550
DVU0833
DVU0834: rnhB - ribonuclease HII (TIGR), at 923,544 to 924,206
rnhB
Position (kb) 923
924 Strain fitness (log2 ratio) -1
0
1
2 at 922.174 kb on - strand at 922.184 kb on - strand at 922.184 kb on - strand at 922.223 kb on - strand at 922.297 kb on - strand at 922.304 kb on - strand at 922.321 kb on - strand at 922.335 kb on - strand at 922.380 kb on + strand at 922.499 kb on - strand, within DVU0832 at 922.519 kb on - strand, within DVU0832 at 922.546 kb on + strand, within DVU0832 at 922.554 kb on - strand, within DVU0832 at 922.598 kb on - strand, within DVU0832 at 922.620 kb on + strand, within DVU0832 at 922.740 kb on + strand, within DVU0832 at 922.746 kb on - strand, within DVU0832 at 922.791 kb on + strand, within DVU0832 at 922.875 kb on + strand, within DVU0832 at 922.880 kb on - strand, within DVU0832 at 922.883 kb on - strand, within DVU0832 at 922.907 kb on + strand, within DVU0832 at 923.067 kb on + strand, within DVU0832 at 923.075 kb on - strand, within DVU0832 at 923.121 kb on - strand, within DVU0832 at 923.184 kb on - strand at 923.201 kb on - strand at 923.241 kb on + strand, within DVU0833 at 923.270 kb on + strand, within DVU0833 at 923.270 kb on + strand, within DVU0833 at 923.270 kb on + strand, within DVU0833 at 923.270 kb on + strand, within DVU0833 at 923.278 kb on - strand, within DVU0833 at 923.283 kb on - strand, within DVU0833 at 923.383 kb on + strand, within DVU0833 at 923.383 kb on + strand, within DVU0833 at 923.468 kb on + strand, within DVU0833 at 923.580 kb on + strand at 923.583 kb on - strand at 923.583 kb on - strand at 923.638 kb on + strand, within rnhB at 923.654 kb on - strand, within rnhB at 923.665 kb on + strand, within rnhB at 923.803 kb on + strand, within rnhB at 923.825 kb on + strand, within rnhB at 923.852 kb on - strand, within rnhB at 924.022 kb on + strand, within rnhB at 924.037 kb on + strand, within rnhB at 924.116 kb on + strand, within rnhB at 924.161 kb on - strand at 924.185 kb on + strand at 924.289 kb on + strand at 924.297 kb on - strand at 924.353 kb on - strand at 924.371 kb on + strand at 924.384 kb on - strand at 924.434 kb on - strand at 924.438 kb on + strand at 924.444 kb on - strand at 924.453 kb on + strand at 924.461 kb on - strand at 924.469 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 without vitamins with Casaminos 0.05% remove 922,174 - -0.4 922,184 - +0.5 922,184 - +0.8 922,223 - -0.3 922,297 - +0.9 922,304 - +0.3 922,321 - -0.7 922,335 - -0.6 922,380 + -0.3 922,499 - DVU0832 0.15 +0.9 922,519 - DVU0832 0.17 -0.2 922,546 + DVU0832 0.20 -0.4 922,554 - DVU0832 0.21 -0.4 922,598 - DVU0832 0.27 +0.6 922,620 + DVU0832 0.29 -0.3 922,740 + DVU0832 0.44 -0.1 922,746 - DVU0832 0.45 +2.5 922,791 + DVU0832 0.50 -0.3 922,875 + DVU0832 0.60 +0.6 922,880 - DVU0832 0.61 -0.3 922,883 - DVU0832 0.61 +1.5 922,907 + DVU0832 0.64 -0.5 923,067 + DVU0832 0.83 -0.3 923,075 - DVU0832 0.84 -0.5 923,121 - DVU0832 0.90 -0.4 923,184 - -0.0 923,201 - +0.1 923,241 + DVU0833 0.23 +0.8 923,270 + DVU0833 0.31 -0.5 923,270 + DVU0833 0.31 +0.4 923,270 + DVU0833 0.31 -0.4 923,270 + DVU0833 0.31 -1.4 923,278 - DVU0833 0.33 -0.8 923,283 - DVU0833 0.34 -0.3 923,383 + DVU0833 0.59 -0.3 923,383 + DVU0833 0.59 +0.2 923,468 + DVU0833 0.80 -0.2 923,580 + +0.5 923,583 - -0.7 923,583 - +1.1 923,638 + rnhB DVU0834 0.14 +1.6 923,654 - rnhB DVU0834 0.17 -0.8 923,665 + rnhB DVU0834 0.18 +0.9 923,803 + rnhB DVU0834 0.39 -1.0 923,825 + rnhB DVU0834 0.42 +0.1 923,852 - rnhB DVU0834 0.46 +0.0 924,022 + rnhB DVU0834 0.72 +0.9 924,037 + rnhB DVU0834 0.74 -0.1 924,116 + rnhB DVU0834 0.86 -0.1 924,161 - +0.5 924,185 + +0.9 924,289 + -0.2 924,297 - -0.3 924,353 - -0.2 924,371 + +2.5 924,384 - -0.7 924,434 - -0.0 924,438 + -1.2 924,444 - -0.0 924,453 + -0.1 924,461 - +0.9 924,469 - +0.9
Or see this region's nucleotide sequence