Experiment: MoLS4 without vitamins with Casaminos 0.05%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0049 and motA-1 are separated by 11 nucleotides motA-1 and DVU0051 are separated by 275 nucleotides
DVU0049: DVU0049 - OmpA family protein (TIGR), at 53,901 to 54,995
DVU0049
DVU0050: motA-1 - chemotaxis protein MotA (TIGR), at 55,007 to 55,765
motA-1
DVU0051: DVU0051 - conserved hypothetical protein TIGR00044 (TIGR), at 56,041 to 56,754
DVU0051
Position (kb) 55
56 Strain fitness (log2 ratio) -2
-1
0
1
2 at 54.105 kb on - strand, within DVU0049 at 54.274 kb on + strand, within DVU0049 at 54.282 kb on - strand, within DVU0049 at 54.290 kb on + strand, within DVU0049 at 54.456 kb on + strand, within DVU0049 at 54.464 kb on - strand, within DVU0049 at 54.482 kb on + strand, within DVU0049 at 54.503 kb on - strand, within DVU0049 at 54.514 kb on + strand, within DVU0049 at 54.543 kb on + strand, within DVU0049 at 54.553 kb on - strand, within DVU0049 at 54.563 kb on - strand, within DVU0049 at 54.566 kb on + strand, within DVU0049 at 54.596 kb on + strand, within DVU0049 at 54.605 kb on + strand, within DVU0049 at 54.614 kb on + strand, within DVU0049 at 54.624 kb on + strand, within DVU0049 at 54.646 kb on + strand, within DVU0049 at 54.677 kb on + strand, within DVU0049 at 54.685 kb on + strand, within DVU0049 at 54.685 kb on + strand, within DVU0049 at 54.693 kb on - strand, within DVU0049 at 54.693 kb on - strand, within DVU0049 at 54.707 kb on + strand, within DVU0049 at 54.712 kb on + strand, within DVU0049 at 54.730 kb on - strand, within DVU0049 at 54.778 kb on - strand, within DVU0049 at 54.809 kb on + strand, within DVU0049 at 54.809 kb on + strand, within DVU0049 at 54.817 kb on - strand, within DVU0049 at 54.997 kb on - strand at 54.999 kb on + strand at 55.038 kb on + strand at 55.041 kb on - strand at 55.118 kb on + strand, within motA-1 at 55.189 kb on - strand, within motA-1 at 55.203 kb on - strand, within motA-1 at 55.228 kb on - strand, within motA-1 at 55.257 kb on + strand, within motA-1 at 55.309 kb on + strand, within motA-1 at 55.309 kb on + strand, within motA-1 at 55.317 kb on - strand, within motA-1 at 55.372 kb on + strand, within motA-1 at 55.382 kb on + strand, within motA-1 at 55.390 kb on - strand, within motA-1 at 55.408 kb on + strand, within motA-1 at 55.408 kb on + strand, within motA-1 at 55.408 kb on + strand, within motA-1 at 55.416 kb on - strand, within motA-1 at 55.416 kb on - strand, within motA-1 at 55.540 kb on + strand, within motA-1 at 55.540 kb on - strand, within motA-1 at 55.548 kb on - strand, within motA-1 at 55.561 kb on - strand, within motA-1 at 55.661 kb on - strand, within motA-1 at 55.665 kb on + strand, within motA-1 at 55.665 kb on + strand, within motA-1 at 55.685 kb on - strand, within motA-1 at 55.723 kb on + strand at 55.723 kb on + strand at 55.735 kb on - strand at 55.768 kb on - strand at 55.768 kb on - strand at 55.781 kb on - strand at 55.841 kb on - strand at 55.843 kb on + strand at 55.843 kb on + strand at 55.851 kb on - strand at 55.851 kb on - strand at 55.851 kb on - strand at 55.883 kb on + strand at 55.901 kb on - strand at 55.910 kb on - strand at 55.925 kb on - strand at 55.935 kb on + strand at 55.967 kb on - strand at 55.980 kb on + strand at 55.980 kb on + strand at 56.004 kb on + strand at 56.008 kb on + strand at 56.025 kb on - strand at 56.026 kb on - strand at 56.070 kb on + strand at 56.090 kb on - strand at 56.115 kb on + strand, within DVU0051 at 56.172 kb on + strand, within DVU0051 at 56.172 kb on + strand, within DVU0051 at 56.180 kb on - strand, within DVU0051 at 56.180 kb on - strand, within DVU0051 at 56.180 kb on - strand, within DVU0051 at 56.266 kb on - strand, within DVU0051 at 56.268 kb on + strand, within DVU0051 at 56.276 kb on - strand, within DVU0051 at 56.276 kb on - strand, within DVU0051 at 56.276 kb on - strand, within DVU0051 at 56.331 kb on - strand, within DVU0051 at 56.362 kb on - strand, within DVU0051 at 56.387 kb on - strand, within DVU0051 at 56.456 kb on + strand, within DVU0051 at 56.456 kb on + strand, within DVU0051 at 56.456 kb on + strand, within DVU0051 at 56.464 kb on - strand, within DVU0051 at 56.464 kb on - strand, within DVU0051 at 56.464 kb on - strand, within DVU0051 at 56.464 kb on - strand, within DVU0051 at 56.464 kb on - strand, within DVU0051 at 56.464 kb on - strand, within DVU0051 at 56.464 kb on - strand, within DVU0051 at 56.464 kb on - strand, within DVU0051 at 56.494 kb on - strand, within DVU0051 at 56.508 kb on - strand, within DVU0051 at 56.523 kb on + strand, within DVU0051 at 56.576 kb on + strand, within DVU0051 at 56.631 kb on + strand, within DVU0051 at 56.665 kb on + strand, within DVU0051 at 56.713 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 without vitamins with Casaminos 0.05% remove 54,105 - DVU0049 0.19 +0.8 54,274 + DVU0049 0.34 +0.4 54,282 - DVU0049 0.35 +0.0 54,290 + DVU0049 0.36 -0.5 54,456 + DVU0049 0.51 -0.8 54,464 - DVU0049 0.51 -0.3 54,482 + DVU0049 0.53 +0.4 54,503 - DVU0049 0.55 +1.2 54,514 + DVU0049 0.56 -0.2 54,543 + DVU0049 0.59 +0.1 54,553 - DVU0049 0.60 -0.3 54,563 - DVU0049 0.60 -1.8 54,566 + DVU0049 0.61 +0.0 54,596 + DVU0049 0.63 -0.3 54,605 + DVU0049 0.64 +0.1 54,614 + DVU0049 0.65 +0.1 54,624 + DVU0049 0.66 -2.2 54,646 + DVU0049 0.68 -0.3 54,677 + DVU0049 0.71 +0.5 54,685 + DVU0049 0.72 +0.8 54,685 + DVU0049 0.72 -0.5 54,693 - DVU0049 0.72 +0.0 54,693 - DVU0049 0.72 -1.2 54,707 + DVU0049 0.74 -0.2 54,712 + DVU0049 0.74 -0.3 54,730 - DVU0049 0.76 -0.1 54,778 - DVU0049 0.80 -0.4 54,809 + DVU0049 0.83 -0.1 54,809 + DVU0049 0.83 -0.2 54,817 - DVU0049 0.84 +1.8 54,997 - -1.0 54,999 + -0.0 55,038 + -0.5 55,041 - -0.1 55,118 + motA-1 DVU0050 0.15 -0.1 55,189 - motA-1 DVU0050 0.24 -1.6 55,203 - motA-1 DVU0050 0.26 +0.3 55,228 - motA-1 DVU0050 0.29 +1.2 55,257 + motA-1 DVU0050 0.33 +1.2 55,309 + motA-1 DVU0050 0.40 +0.7 55,309 + motA-1 DVU0050 0.40 +0.5 55,317 - motA-1 DVU0050 0.41 -0.3 55,372 + motA-1 DVU0050 0.48 -1.2 55,382 + motA-1 DVU0050 0.49 -0.6 55,390 - motA-1 DVU0050 0.50 +0.0 55,408 + motA-1 DVU0050 0.53 +1.2 55,408 + motA-1 DVU0050 0.53 -0.4 55,408 + motA-1 DVU0050 0.53 -0.0 55,416 - motA-1 DVU0050 0.54 +1.3 55,416 - motA-1 DVU0050 0.54 -0.2 55,540 + motA-1 DVU0050 0.70 -0.2 55,540 - motA-1 DVU0050 0.70 -0.7 55,548 - motA-1 DVU0050 0.71 -0.8 55,561 - motA-1 DVU0050 0.73 -0.8 55,661 - motA-1 DVU0050 0.86 -1.1 55,665 + motA-1 DVU0050 0.87 -0.4 55,665 + motA-1 DVU0050 0.87 +0.8 55,685 - motA-1 DVU0050 0.89 -0.1 55,723 + -0.8 55,723 + -0.1 55,735 - -0.1 55,768 - +0.1 55,768 - -0.0 55,781 - +0.8 55,841 - +0.4 55,843 + -0.5 55,843 + -0.6 55,851 - -0.3 55,851 - -0.1 55,851 - -0.6 55,883 + -0.8 55,901 - +0.8 55,910 - -1.8 55,925 - +1.5 55,935 + -0.1 55,967 - -0.6 55,980 + +0.2 55,980 + -0.1 56,004 + +1.8 56,008 + +0.2 56,025 - -0.2 56,026 - -0.7 56,070 + -1.7 56,090 - -2.6 56,115 + DVU0051 0.10 -2.4 56,172 + DVU0051 0.18 -1.0 56,172 + DVU0051 0.18 -1.0 56,180 - DVU0051 0.19 +1.8 56,180 - DVU0051 0.19 -0.8 56,180 - DVU0051 0.19 -1.6 56,266 - DVU0051 0.32 -2.2 56,268 + DVU0051 0.32 -1.5 56,276 - DVU0051 0.33 -2.0 56,276 - DVU0051 0.33 -1.3 56,276 - DVU0051 0.33 +0.8 56,331 - DVU0051 0.41 -1.4 56,362 - DVU0051 0.45 -1.6 56,387 - DVU0051 0.48 +2.3 56,456 + DVU0051 0.58 -2.0 56,456 + DVU0051 0.58 -1.7 56,456 + DVU0051 0.58 -1.7 56,464 - DVU0051 0.59 +0.8 56,464 - DVU0051 0.59 -1.6 56,464 - DVU0051 0.59 -1.2 56,464 - DVU0051 0.59 -2.2 56,464 - DVU0051 0.59 -1.1 56,464 - DVU0051 0.59 +0.2 56,464 - DVU0051 0.59 -1.9 56,464 - DVU0051 0.59 -1.3 56,494 - DVU0051 0.63 -2.6 56,508 - DVU0051 0.65 -0.8 56,523 + DVU0051 0.68 -1.7 56,576 + DVU0051 0.75 +0.8 56,631 + DVU0051 0.83 -0.8 56,665 + DVU0051 0.87 -2.1 56,713 + -0.2
Or see this region's nucleotide sequence