Experiment: MoLS4 without vitamins with Casaminos 0.05%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ntrX and gpm are separated by 157 nucleotides gpm and DVU2937 are separated by 200 nucleotides
DVU2934: ntrX - sigma-54 dependent transcriptional regulator/response regulator (TIGR), at 3,038,778 to 3,040,196
ntrX
DVU2935: gpm - phosphoglycerate mutase (TIGR), at 3,040,354 to 3,041,106
gpm
DVU2937: DVU2937 - TPR domain protein/response regulator receiver domain protein (TIGR), at 3,041,307 to 3,042,662
DVU2937
Position (kb)
3040
3041
3042 Strain fitness (log2 ratio)
-1
0
1
2 at 3040.314 kb on - strand at 3040.388 kb on + strand at 3040.396 kb on - strand at 3040.455 kb on - strand, within gpm at 3040.469 kb on + strand, within gpm at 3040.517 kb on + strand, within gpm at 3040.525 kb on - strand, within gpm at 3040.525 kb on - strand, within gpm at 3040.574 kb on + strand, within gpm at 3040.627 kb on + strand, within gpm at 3040.635 kb on - strand, within gpm at 3040.708 kb on + strand, within gpm at 3040.779 kb on - strand, within gpm at 3040.794 kb on - strand, within gpm at 3040.805 kb on + strand, within gpm at 3040.805 kb on + strand, within gpm at 3040.827 kb on + strand, within gpm at 3040.835 kb on - strand, within gpm at 3040.901 kb on + strand, within gpm at 3040.973 kb on + strand, within gpm at 3041.064 kb on - strand at 3041.133 kb on + strand at 3041.151 kb on - strand at 3041.235 kb on + strand at 3041.235 kb on + strand at 3041.235 kb on + strand at 3041.323 kb on + strand at 3041.345 kb on + strand at 3041.397 kb on - strand at 3041.434 kb on + strand at 3041.459 kb on - strand, within DVU2937 at 3041.566 kb on + strand, within DVU2937 at 3041.752 kb on + strand, within DVU2937 at 3041.808 kb on + strand, within DVU2937 at 3041.857 kb on + strand, within DVU2937 at 3041.867 kb on + strand, within DVU2937 at 3042.043 kb on + strand, within DVU2937 at 3042.043 kb on + strand, within DVU2937 at 3042.051 kb on - strand, within DVU2937 at 3042.090 kb on + strand, within DVU2937
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 without vitamins with Casaminos 0.05% remove 3,040,314 - -1.0 3,040,388 + -0.5 3,040,396 - -0.7 3,040,455 - gpm DVU2935 0.13 -0.3 3,040,469 + gpm DVU2935 0.15 -0.3 3,040,517 + gpm DVU2935 0.22 -0.8 3,040,525 - gpm DVU2935 0.23 -0.1 3,040,525 - gpm DVU2935 0.23 -0.1 3,040,574 + gpm DVU2935 0.29 -1.6 3,040,627 + gpm DVU2935 0.36 -1.6 3,040,635 - gpm DVU2935 0.37 -0.7 3,040,708 + gpm DVU2935 0.47 -0.9 3,040,779 - gpm DVU2935 0.56 -1.4 3,040,794 - gpm DVU2935 0.58 -0.1 3,040,805 + gpm DVU2935 0.60 -0.3 3,040,805 + gpm DVU2935 0.60 -0.8 3,040,827 + gpm DVU2935 0.63 -1.3 3,040,835 - gpm DVU2935 0.64 -0.5 3,040,901 + gpm DVU2935 0.73 +0.2 3,040,973 + gpm DVU2935 0.82 -1.7 3,041,064 - -1.7 3,041,133 + -0.7 3,041,151 - +0.9 3,041,235 + -0.5 3,041,235 + -0.7 3,041,235 + -0.4 3,041,323 + -1.2 3,041,345 + +0.3 3,041,397 - +0.5 3,041,434 + -0.4 3,041,459 - DVU2937 0.11 +1.9 3,041,566 + DVU2937 0.19 -0.4 3,041,752 + DVU2937 0.33 -1.1 3,041,808 + DVU2937 0.37 -0.3 3,041,857 + DVU2937 0.41 -0.2 3,041,867 + DVU2937 0.41 -0.9 3,042,043 + DVU2937 0.54 +0.9 3,042,043 + DVU2937 0.54 -1.1 3,042,051 - DVU2937 0.55 -0.2 3,042,090 + DVU2937 0.58 -0.7
Or see this region's nucleotide sequence