Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1004

Experiment: MoLS4 without vitamins with Casaminos 0.05%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1003 and DVU1004 are separated by 141 nucleotidesDVU1004 and DVU1005 are separated by 230 nucleotides DVU1003: DVU1003 - dnaJ domain protein (TIGR), at 1,098,299 to 1,099,285 DVU1003 DVU1004: DVU1004 - membrane protein, putative (TIGR), at 1,099,427 to 1,100,311 DVU1004 DVU1005: DVU1005 - hypothetical protein (TIGR), at 1,100,542 to 1,101,762 DVU1005 Position (kb) 1099 1100 1101Strain fitness (log2 ratio) -2 -1 0 1 2at 1098.548 kb on - strand, within DVU1003at 1098.570 kb on - strand, within DVU1003at 1098.612 kb on - strand, within DVU1003at 1098.675 kb on + strand, within DVU1003at 1098.683 kb on - strand, within DVU1003at 1098.742 kb on + strand, within DVU1003at 1098.766 kb on - strand, within DVU1003at 1098.843 kb on + strand, within DVU1003at 1098.904 kb on - strand, within DVU1003at 1099.040 kb on + strand, within DVU1003at 1099.136 kb on + strand, within DVU1003at 1099.164 kb on - strand, within DVU1003at 1099.164 kb on - strand, within DVU1003at 1099.279 kb on + strandat 1099.286 kb on + strandat 1099.288 kb on - strandat 1099.349 kb on + strandat 1099.393 kb on + strandat 1099.393 kb on + strandat 1099.401 kb on - strandat 1099.406 kb on + strandat 1099.409 kb on - strandat 1099.415 kb on + strandat 1099.464 kb on + strandat 1099.475 kb on + strandat 1099.483 kb on - strandat 1099.504 kb on + strandat 1099.513 kb on - strandat 1099.515 kb on + strandat 1099.551 kb on + strand, within DVU1004at 1099.592 kb on - strand, within DVU1004at 1099.675 kb on + strand, within DVU1004at 1099.675 kb on + strand, within DVU1004at 1099.776 kb on + strand, within DVU1004at 1099.822 kb on + strand, within DVU1004at 1099.910 kb on + strand, within DVU1004at 1100.016 kb on + strand, within DVU1004at 1100.024 kb on - strand, within DVU1004at 1100.024 kb on - strand, within DVU1004at 1100.038 kb on + strand, within DVU1004at 1100.059 kb on - strand, within DVU1004at 1100.061 kb on + strand, within DVU1004at 1100.076 kb on - strand, within DVU1004at 1100.172 kb on + strand, within DVU1004at 1100.180 kb on - strand, within DVU1004at 1100.213 kb on + strand, within DVU1004at 1100.213 kb on + strand, within DVU1004at 1100.222 kb on + strand, within DVU1004at 1100.268 kb on + strandat 1100.337 kb on - strandat 1100.396 kb on + strandat 1100.406 kb on - strandat 1100.452 kb on + strandat 1100.452 kb on + strandat 1100.492 kb on - strandat 1100.572 kb on + strandat 1100.609 kb on + strandat 1100.616 kb on - strandat 1100.668 kb on - strand, within DVU1005at 1100.732 kb on - strand, within DVU1005at 1100.858 kb on - strand, within DVU1005at 1100.860 kb on + strand, within DVU1005at 1100.880 kb on + strand, within DVU1005at 1100.960 kb on + strand, within DVU1005at 1100.981 kb on + strand, within DVU1005at 1101.026 kb on + strand, within DVU1005at 1101.049 kb on + strand, within DVU1005at 1101.073 kb on + strand, within DVU1005at 1101.073 kb on + strand, within DVU1005at 1101.081 kb on - strand, within DVU1005at 1101.103 kb on + strand, within DVU1005at 1101.145 kb on - strand, within DVU1005at 1101.163 kb on - strand, within DVU1005at 1101.205 kb on - strand, within DVU1005at 1101.264 kb on - strand, within DVU1005

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 without vitamins with Casaminos 0.05%
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1,098,548 - DVU1003 0.25 +0.1
1,098,570 - DVU1003 0.27 -0.8
1,098,612 - DVU1003 0.32 -0.4
1,098,675 + DVU1003 0.38 +0.9
1,098,683 - DVU1003 0.39 -0.3
1,098,742 + DVU1003 0.45 -0.2
1,098,766 - DVU1003 0.47 +0.6
1,098,843 + DVU1003 0.55 +0.1
1,098,904 - DVU1003 0.61 +0.1
1,099,040 + DVU1003 0.75 -1.1
1,099,136 + DVU1003 0.85 -0.3
1,099,164 - DVU1003 0.88 -1.1
1,099,164 - DVU1003 0.88 +1.1
1,099,279 + -0.5
1,099,286 + +2.5
1,099,288 - +0.9
1,099,349 + +0.3
1,099,393 + -0.7
1,099,393 + -0.2
1,099,401 - +0.7
1,099,406 + +0.0
1,099,409 - -0.7
1,099,415 + -0.5
1,099,464 + +0.2
1,099,475 + +0.9
1,099,483 - +0.2
1,099,504 + +0.3
1,099,513 - +0.8
1,099,515 + +0.4
1,099,551 + DVU1004 0.14 -0.1
1,099,592 - DVU1004 0.19 +0.7
1,099,675 + DVU1004 0.28 +0.7
1,099,675 + DVU1004 0.28 -0.3
1,099,776 + DVU1004 0.39 +0.6
1,099,822 + DVU1004 0.45 +0.4
1,099,910 + DVU1004 0.55 +0.5
1,100,016 + DVU1004 0.67 -0.1
1,100,024 - DVU1004 0.67 +0.2
1,100,024 - DVU1004 0.67 +0.9
1,100,038 + DVU1004 0.69 +1.9
1,100,059 - DVU1004 0.71 +0.2
1,100,061 + DVU1004 0.72 +0.9
1,100,076 - DVU1004 0.73 +0.9
1,100,172 + DVU1004 0.84 +0.1
1,100,180 - DVU1004 0.85 +2.5
1,100,213 + DVU1004 0.89 +0.1
1,100,213 + DVU1004 0.89 +0.8
1,100,222 + DVU1004 0.90 +0.1
1,100,268 + +1.9
1,100,337 - -0.1
1,100,396 + -0.7
1,100,406 - -2.3
1,100,452 + -0.6
1,100,452 + +0.6
1,100,492 - -1.0
1,100,572 + -0.1
1,100,609 + +0.2
1,100,616 - +0.5
1,100,668 - DVU1005 0.10 +0.1
1,100,732 - DVU1005 0.16 -0.8
1,100,858 - DVU1005 0.26 -0.1
1,100,860 + DVU1005 0.26 -0.3
1,100,880 + DVU1005 0.28 -0.7
1,100,960 + DVU1005 0.34 -0.7
1,100,981 + DVU1005 0.36 -0.5
1,101,026 + DVU1005 0.40 +0.1
1,101,049 + DVU1005 0.42 +0.9
1,101,073 + DVU1005 0.43 -1.1
1,101,073 + DVU1005 0.43 -1.7
1,101,081 - DVU1005 0.44 -0.4
1,101,103 + DVU1005 0.46 -0.7
1,101,145 - DVU1005 0.49 -0.4
1,101,163 - DVU1005 0.51 -1.1
1,101,205 - DVU1005 0.54 -0.8
1,101,264 - DVU1005 0.59 -0.4

Or see this region's nucleotide sequence