Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS29815

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs
6,624,545	-		PFLU_RS29810	0.24	-3.0
6,624,574	+		PFLU_RS29810	0.27	+0.8
6,624,574	+		PFLU_RS29810	0.27	+1.4
6,624,602	+		PFLU_RS29810	0.30	-2.3
6,624,602	+		PFLU_RS29810	0.30	+3.3
6,624,602	+		PFLU_RS29810	0.30	-0.6
6,624,602	+		PFLU_RS29810	0.30	-2.5
6,624,603	-		PFLU_RS29810	0.30	-1.9
6,624,603	-		PFLU_RS29810	0.30	+1.0
6,624,603	-		PFLU_RS29810	0.30	-0.0
6,624,603	-		PFLU_RS29810	0.30	-2.1
6,624,603	-		PFLU_RS29810	0.30	-0.8
6,624,603	-		PFLU_RS29810	0.30	-1.9
6,624,603	-		PFLU_RS29810	0.30	-2.6
6,624,603	-		PFLU_RS29810	0.30	+2.8
6,624,603	-		PFLU_RS29810	0.30	-3.6
6,624,603	-		PFLU_RS29810	0.30	-2.1
6,624,603	-		PFLU_RS29810	0.30	+1.5
6,624,639	+		PFLU_RS29810	0.34	+1.0
6,624,640	-		PFLU_RS29810	0.34	+0.5
6,624,640	-		PFLU_RS29810	0.34	-3.6
6,624,640	-		PFLU_RS29810	0.34	-1.3
6,624,640	-		PFLU_RS29810	0.34	-1.9
6,624,640	-		PFLU_RS29810	0.34	+0.5
6,624,640	-		PFLU_RS29810	0.34	+0.6
6,624,688	+		PFLU_RS29810	0.39	-0.6
6,624,689	-		PFLU_RS29810	0.40	+0.9
6,624,789	+		PFLU_RS29810	0.51	-0.7
6,624,789	+		PFLU_RS29810	0.51	-0.2
6,624,789	+		PFLU_RS29810	0.51	+1.3
6,624,789	+		PFLU_RS29810	0.51	+1.1
6,624,790	-		PFLU_RS29810	0.51	-0.8
6,624,790	-		PFLU_RS29810	0.51	+0.2
6,625,037	+		PFLU_RS29810	0.78	+1.8
6,625,037	+		PFLU_RS29810	0.78	+0.4
6,625,038	-		PFLU_RS29810	0.78	-2.7
6,625,076	-		PFLU_RS29810	0.82	+1.7
6,625,126	+		PFLU_RS29810	0.88	+1.3
6,625,127	-		PFLU_RS29810	0.88	+0.1
6,625,127	-		PFLU_RS29810	0.88	+2.7
6,625,287	+				-2.7
6,625,287	+				-1.2
6,625,287	+				-1.5
6,625,287	+				-1.1
6,625,287	+				+0.6
6,625,287	+				-0.1
6,625,287	+				+0.3
6,625,288	-				+0.4
6,625,288	-				-0.1
6,625,288	-				+0.2
6,625,466	+				+0.2
6,625,475	+				+0.3
6,625,489	+				-1.9
6,625,489	+				+2.1
6,625,489	+				+1.5
6,625,489	+				-2.0
6,625,490	-				+0.5
6,625,490	-				-1.5
6,625,490	-				-2.5
6,625,490	-				-1.3
6,625,490	-				-0.6
6,625,490	-				+0.7
6,625,490	-				-2.1
6,625,490	-				-0.6
6,625,490	-				-0.6
6,625,490	-				+0.3
6,625,490	-				-0.3
6,625,492	+				+0.1
6,625,492	+				-1.6
6,625,492	+				-2.6
6,625,493	-				+1.3
6,625,493	-				-2.5
6,625,493	-				-0.6
6,625,521	+				-0.3
6,625,522	-				+2.7
6,625,807	+		PFLU_RS29815	0.27	-1.6
6,625,807	+		PFLU_RS29815	0.27	-0.3
6,625,807	+		PFLU_RS29815	0.27	-1.8
6,625,813	+		PFLU_RS29815	0.28	-1.3
6,625,813	+		PFLU_RS29815	0.28	-1.6
6,625,813	+		PFLU_RS29815	0.28	-3.4
6,625,814	-		PFLU_RS29815	0.28	-0.3
6,625,814	-		PFLU_RS29815	0.28	-0.6
6,625,865	-		PFLU_RS29815	0.31	-0.3
6,625,973	+		PFLU_RS29815	0.39	-0.3
6,625,973	+		PFLU_RS29815	0.39	-2.1
6,626,114	+		PFLU_RS29815	0.49	-2.4
6,626,677	+		PFLU_RS29815	0.88	-1.1
6,626,677	+		PFLU_RS29815	0.88	-2.7
6,626,677	+		PFLU_RS29815	0.88	+1.5
6,626,842	+				-0.4
6,626,842	+				-0.7
6,626,842	+				-2.2
6,626,843	-				-3.2
6,626,843	-				+1.3
6,626,843	-				-0.5
6,626,879	-				+1.6
6,626,879	-				-3.8
6,626,960	+				+0.4
6,626,960	+				+0.6
6,627,052	+				-2.5
6,627,052	+				+1.7
6,627,052	+				-0.1
6,627,052	+				+1.2
6,627,053	-				+1.0
6,627,053	-				-1.9
6,627,053	-				-2.5
6,627,053	-				+0.6
6,627,053	-				-0.2
6,627,053	-				+1.7
6,627,053	-				+0.8
6,627,053	-				+1.3
6,627,056	+				+0.9
6,627,056	+				+1.7
6,627,056	+				+1.7
6,627,056	+				+2.4
6,627,056	+				+1.1
6,627,056	+				+1.5
6,627,056	+				-2.0
6,627,056	+				-2.4
6,627,056	+				-1.3
6,627,056	+				+0.1
6,627,056	+				-0.4
6,627,056	+				-1.3
6,627,056	+				+0.3
6,627,056	+				-1.9
6,627,056	+				-2.3
6,627,056	+				+1.3
6,627,056	+				-0.3
6,627,056	+				+0.6
6,627,056	+				+0.6
6,627,056	+				+1.8
6,627,056	+				-1.6
6,627,056	+				+0.6
6,627,056	+				+1.2
6,627,056	+				-1.4
6,627,056	+				-0.9
6,627,056	+				-1.1
6,627,056	+				+1.3
6,627,056	+				+1.0
6,627,056	+				-1.5
6,627,056	+				-1.2
6,627,056	+				-1.5
6,627,056	+				+0.7
6,627,056	+				-1.2
6,627,056	+				-0.3
6,627,056	+				-1.5
6,627,056	+				-2.0
6,627,057	-				+1.0
6,627,057	-				-0.6
6,627,057	-				-1.2
6,627,057	-				+1.7
6,627,057	-				-3.9
6,627,057	-				+1.2
6,627,057	-				-0.1
6,627,057	-				-3.5
6,627,057	-				+0.2
6,627,057	-				+1.3
6,627,057	-				+0.2
6,627,057	-				-0.4
6,627,057	-				+0.3
6,627,057	-				-1.5
6,627,057	-				+0.9
6,627,057	-				-0.9
6,627,057	-				-3.6
6,627,057	-				-2.6
6,627,057	-				-1.0
6,627,057	-				-2.9
6,627,057	-				-0.5
6,627,057	-				+1.7
6,627,057	-				-3.0
6,627,057	-				+1.4
6,627,058	+				-2.6
6,627,058	+				-0.1
6,627,058	+				+0.7
6,627,058	+				+0.6
6,627,058	+				-0.0
6,627,058	+				-3.4
6,627,058	+				-2.5
6,627,058	+				-2.5
6,627,058	+				+2.6
6,627,058	+				-2.3
6,627,058	+				+0.5
6,627,059	-				-2.6
6,627,059	-				+0.5
6,627,059	-				+0.4
6,627,059	-				+3.7
6,627,059	-				+1.2
6,627,059	-				+1.7
6,627,059	-				-3.0
6,627,106	+				-0.0
6,627,106	+				+0.4
6,627,106	+				-3.3
6,627,106	+				-1.3
6,627,106	+				-1.8
6,627,107	-				+0.5
6,627,107	-				+0.6
6,627,107	-				+1.0
6,627,107	-				+0.7
6,627,107	-				+0.0
6,627,107	-				+1.3
6,627,107	-				+0.9
6,627,127	+				-2.9
6,627,127	+				-0.2
6,627,127	+				+1.1
6,627,127	+				+0.8
6,627,127	+				+1.2
6,627,127	+				+0.6
6,627,128	-				+1.4
6,627,128	-				-1.8
6,627,128	-				+1.0
6,627,212	+				+1.3
6,627,274	+				+1.9
6,627,274	+				-0.6
6,627,274	+				-1.3
6,627,275	-				+1.7
6,627,275	-				-1.5
6,627,275	-				+1.6
6,627,275	-				+2.0
6,627,275	-				-2.8
6,627,306	+				-0.1
6,627,306	+				+0.5
6,627,306	+				-1.4
6,627,306	+				-0.7
6,627,306	+				+0.7
6,627,331	+				+0.2
6,627,332	-				-2.8
6,627,332	-				+0.8
6,627,573	+		PFLU_RS29820	0.23	+0.9
6,627,573	+		PFLU_RS29820	0.23	-3.1
6,627,573	+		PFLU_RS29820	0.23	-3.2
6,627,573	+		PFLU_RS29820	0.23	+0.7
6,627,573	+		PFLU_RS29820	0.23	+1.0
6,627,573	+		PFLU_RS29820	0.23	+2.0
6,627,573	+		PFLU_RS29820	0.23	+1.0
6,627,573	+		PFLU_RS29820	0.23	+2.2
6,627,573	+		PFLU_RS29820	0.23	-2.2
6,627,573	+		PFLU_RS29820	0.23	-3.4
6,627,574	-		PFLU_RS29820	0.23	+0.1
6,627,574	-		PFLU_RS29820	0.23	+0.1
6,627,574	-		PFLU_RS29820	0.23	+0.4
6,627,574	-		PFLU_RS29820	0.23	-2.0
6,627,574	-		PFLU_RS29820	0.23	-3.6
6,627,600	+		PFLU_RS29820	0.25	-0.1
6,627,600	+		PFLU_RS29820	0.25	+1.4
6,627,600	+		PFLU_RS29820	0.25	+0.1
6,627,601	-		PFLU_RS29820	0.25	+0.7
6,627,601	-		PFLU_RS29820	0.25	-0.2
6,627,601	-		PFLU_RS29820	0.25	-0.6
6,627,601	-		PFLU_RS29820	0.25	-3.1
6,627,618	+		PFLU_RS29820	0.26	-1.7
6,627,618	+		PFLU_RS29820	0.26	+1.8
6,627,619	-		PFLU_RS29820	0.26	+1.0
6,627,619	-		PFLU_RS29820	0.26	+1.4
6,627,619	-		PFLU_RS29820	0.26	+0.0
6,627,619	-		PFLU_RS29820	0.26	+1.7
6,627,619	-		PFLU_RS29820	0.26	-0.2
6,627,619	-		PFLU_RS29820	0.26	+0.5
6,627,619	-		PFLU_RS29820	0.26	+1.1
6,627,619	-		PFLU_RS29820	0.26	-1.6
6,627,619	-		PFLU_RS29820	0.26	+0.2
6,627,621	+		PFLU_RS29820	0.27	-1.2
6,627,621	+		PFLU_RS29820	0.27	-1.3
6,627,621	+		PFLU_RS29820	0.27	+0.4
6,627,621	+		PFLU_RS29820	0.27	+3.0
6,627,621	+		PFLU_RS29820	0.27	-0.5
6,627,621	+		PFLU_RS29820	0.27	-0.1
6,627,621	+		PFLU_RS29820	0.27	-2.5
6,627,621	+		PFLU_RS29820	0.27	+0.5
6,627,621	+		PFLU_RS29820	0.27	-3.5
6,627,621	+		PFLU_RS29820	0.27	-0.5
6,627,621	+		PFLU_RS29820	0.27	-1.6
6,627,621	+		PFLU_RS29820	0.27	+0.6
6,627,621	+		PFLU_RS29820	0.27	+2.0
6,627,622	-		PFLU_RS29820	0.27	+1.9
6,627,622	-		PFLU_RS29820	0.27	+0.7
6,627,622	-		PFLU_RS29820	0.27	-1.9
6,627,622	-		PFLU_RS29820	0.27	+0.0
6,627,622	-		PFLU_RS29820	0.27	+0.5
6,627,622	-		PFLU_RS29820	0.27	-2.4
6,627,622	-		PFLU_RS29820	0.27	+2.2
6,627,622	-		PFLU_RS29820	0.27	+1.7
6,627,622	-		PFLU_RS29820	0.27	-3.0
6,627,622	-		PFLU_RS29820	0.27	-0.4
6,627,622	-		PFLU_RS29820	0.27	-3.2
6,627,656	+		PFLU_RS29820	0.29	-3.1
6,627,765	+		PFLU_RS29820	0.37	-2.8
6,627,765	+		PFLU_RS29820	0.37	-1.0
6,627,765	+		PFLU_RS29820	0.37	+1.7
6,627,765	+		PFLU_RS29820	0.37	+0.7
6,627,765	+		PFLU_RS29820	0.37	-0.9
6,627,765	+		PFLU_RS29820	0.37	+1.5
6,627,765	+		PFLU_RS29820	0.37	-2.5
6,627,765	+		PFLU_RS29820	0.37	+0.2
6,627,766	-		PFLU_RS29820	0.37	+0.5
6,627,766	-		PFLU_RS29820	0.37	-0.2
6,627,766	-		PFLU_RS29820	0.37	-2.6
6,627,766	-		PFLU_RS29820	0.37	-2.6
6,627,766	-		PFLU_RS29820	0.37	+0.5
6,627,766	-		PFLU_RS29820	0.37	-0.1
6,627,766	-		PFLU_RS29820	0.37	-2.4
6,627,766	-		PFLU_RS29820	0.37	+1.2
6,627,787	+		PFLU_RS29820	0.38	+0.2
6,627,788	-		PFLU_RS29820	0.38	+1.9
6,627,788	-		PFLU_RS29820	0.38	+0.2