Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS26560

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs
5,936,766	+		PFLU_RS26555	0.53	+0.7
5,936,767	-		PFLU_RS26555	0.53	-1.9
5,936,767	-		PFLU_RS26555	0.53	-2.2
5,936,767	-		PFLU_RS26555	0.53	+0.3
5,936,917	-		PFLU_RS26555	0.64	+0.3
5,936,917	-		PFLU_RS26555	0.64	+0.3
5,936,917	-		PFLU_RS26555	0.64	+0.1
5,936,917	-		PFLU_RS26555	0.64	+0.1
5,936,917	-		PFLU_RS26555	0.64	-0.7
5,937,072	+		PFLU_RS26555	0.76	-0.9
5,937,072	+		PFLU_RS26555	0.76	+2.7
5,937,234	+		PFLU_RS26555	0.88	-1.7
5,937,235	-		PFLU_RS26555	0.88	+2.6
5,937,235	-		PFLU_RS26555	0.88	-1.0
5,937,235	-		PFLU_RS26555	0.88	+2.0
5,937,289	+				+1.3
5,937,387	+				+0.6
5,937,387	+				+1.9
5,937,388	-				-2.7
5,937,388	-				+1.3
5,937,388	-				-2.8
5,937,399	+				-1.2
5,937,460	+				+1.0
5,937,460	+				+1.0
5,937,460	+				-0.4
5,937,460	+				-0.3
5,937,460	+				-2.1
5,937,460	+				-2.1
5,937,461	-				+1.2
5,937,461	-				-4.3
5,937,461	-				+2.4
5,937,461	-				-0.6
5,937,461	-				-0.6
5,937,461	-				+2.9
5,937,461	-				-2.4
5,937,461	-				-2.6
5,937,461	-				+1.2
5,937,461	-				+0.5
5,937,461	-				+0.5
5,937,461	-				+0.1
5,937,461	-				-2.3
5,937,525	+				-0.9
5,937,525	+				-0.5
5,937,525	+				-0.4
5,937,525	+				+1.1
5,937,526	-				+0.4
5,937,526	-				-2.5
5,937,526	-				+0.6
5,937,529	+				-0.9
5,937,529	+				+4.0
5,937,529	+				+0.9
5,937,529	+				+0.5
5,937,529	+				-4.1
5,937,529	+				+0.7
5,937,529	+				-1.3
5,937,529	+				-0.6
5,937,529	+				+1.1
5,937,529	+				-3.1
5,937,529	+				-0.9
5,937,529	+				-1.8
5,937,529	+				+0.8
5,937,529	+				+2.1
5,937,529	+				+0.1
5,937,529	+				-2.3
5,937,529	+				+2.9
5,937,529	+				+0.6
5,937,529	+				-0.5
5,937,530	-				+0.8
5,937,530	-				-0.7
5,937,530	-				+0.0
5,937,530	-				-0.2
5,937,530	-				+0.3
5,937,530	-				-1.3
5,937,530	-				-2.3
5,937,530	-				-2.1
5,937,530	-				-1.8
5,937,530	-				-3.1
5,937,530	-				-0.7
5,937,530	-				-1.0
5,937,530	-				-0.9
5,937,530	-				-0.1
5,937,530	-				+0.7
5,937,530	-				-0.3
5,937,530	-				-1.9
5,937,530	-				+2.0
5,937,530	-				-1.5
5,937,530	-				-3.3
5,937,530	-				-0.5
5,937,530	-				+0.3
5,937,530	-				-3.3
5,937,530	-				+0.4
5,937,530	-				+1.7
5,937,566	+				-1.1
5,937,566	+				+0.1
5,937,566	+				+2.9
5,937,594	+				-2.6
5,937,618	+				-1.1
5,937,618	+				-1.3
5,937,618	+				-1.3
5,937,618	+				-0.9
5,937,618	+				+1.7
5,937,618	+				+0.3
5,937,621	+				-0.9
5,937,621	+				-2.8
5,937,621	+				-0.3
5,937,621	+				+0.7
5,937,621	+				+0.8
5,937,860	+		PFLU_RS26560	0.25	-0.9
5,937,860	+		PFLU_RS26560	0.25	-0.3
5,937,860	+		PFLU_RS26560	0.25	-0.4
5,937,860	+		PFLU_RS26560	0.25	-0.0
5,937,860	+		PFLU_RS26560	0.25	-3.6
5,937,860	+		PFLU_RS26560	0.25	-0.3
5,937,928	+		PFLU_RS26560	0.32	+0.7
5,937,928	+		PFLU_RS26560	0.32	-1.5
5,937,974	+		PFLU_RS26560	0.37	+0.7
5,937,974	+		PFLU_RS26560	0.37	-0.6
5,938,040	+		PFLU_RS26560	0.43	+2.5
5,938,040	+		PFLU_RS26560	0.43	+0.8
5,938,040	+		PFLU_RS26560	0.43	-3.6
5,938,040	+		PFLU_RS26560	0.43	-0.8
5,938,175	+		PFLU_RS26560	0.57	-1.6
5,938,190	+		PFLU_RS26560	0.58	+0.4
5,938,212	+		PFLU_RS26560	0.60	-4.0
5,938,212	+		PFLU_RS26560	0.60	-2.3
5,938,212	+		PFLU_RS26560	0.60	-0.8
5,938,212	+		PFLU_RS26560	0.60	+0.7
5,938,212	+		PFLU_RS26560	0.60	-2.0
5,938,212	+		PFLU_RS26560	0.60	-2.1
5,938,212	+		PFLU_RS26560	0.60	-3.2
5,938,212	+		PFLU_RS26560	0.60	+0.0
5,938,223	+		PFLU_RS26560	0.61	-0.3
5,938,223	+		PFLU_RS26560	0.61	-2.2
5,938,223	+		PFLU_RS26560	0.61	-1.5
5,938,274	+		PFLU_RS26560	0.67	-2.8
5,938,274	+		PFLU_RS26560	0.67	-0.3
5,938,274	+		PFLU_RS26560	0.67	+0.1
5,938,274	+		PFLU_RS26560	0.67	-2.3
5,938,473	+		PFLU_RS26560	0.86	-3.3
5,938,473	+		PFLU_RS26560	0.86	-1.1
5,938,474	-		PFLU_RS26560	0.86	-1.5
5,938,537	+				+0.7
5,938,537	+				-1.6
5,938,537	+				+1.5
5,938,538	-				-1.5
5,938,538	-				-1.3
5,938,538	-				-0.3
5,938,538	-				-0.9
5,938,550	+				-0.2
5,938,550	+				-2.5
5,938,550	+				-1.3
5,938,550	+				+1.1
5,938,550	+				+0.5
5,938,551	-				+2.7
5,938,551	-				-1.1
5,938,551	-				+0.7
5,939,040	+		PFLU_RS26565	0.88	-3.2
5,939,041	-		PFLU_RS26565	0.89	-0.7
5,939,041	-		PFLU_RS26565	0.89	-1.1
5,939,074	+				-1.5
5,939,074	+				+1.4
5,939,074	+				-0.6
5,939,074	+				+1.0
5,939,074	+				+2.9
5,939,074	+				-4.9
5,939,075	-				-0.4
5,939,075	-				+1.9
5,939,075	-				-1.1
5,939,075	-				-0.7
5,939,080	+				+0.8
5,939,081	-				-1.3
5,939,081	-				-1.1
5,939,081	-				+1.4
5,939,081	-				-1.9
5,939,081	-				-0.6
5,939,094	+				-0.9
5,939,094	+				+1.8
5,939,095	-				-0.2
5,939,095	-				+1.4
5,939,095	-				-0.8
5,939,101	+				-2.1
5,939,101	+				-1.3
5,939,102	-				-2.3
5,939,102	-				+1.9
5,939,289	+		PFLU_RS26570	0.22	+2.4
5,939,290	-		PFLU_RS26570	0.22	-2.6
5,939,290	-		PFLU_RS26570	0.22	+1.0
5,939,600	+		PFLU_RS26570	0.59	+0.7
5,939,600	+		PFLU_RS26570	0.59	-1.9