Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS26140 and PFLU_RS26145 are separated by 7 nucleotides PFLU_RS26145 and PFLU_RS26150 are separated by 320 nucleotides
PFLU_RS26140: PFLU_RS26140 - hypothetical protein, at 5,841,741 to 5,843,564
_RS26140
PFLU_RS26145: PFLU_RS26145 - hypothetical protein, at 5,843,572 to 5,843,889
_RS26145
PFLU_RS26150: PFLU_RS26150 - ATP-binding protein, at 5,844,210 to 5,846,648
_RS26150
Position (kb) 5843
5844 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 5842.639 kb on - strand, within PFLU_RS26140 at 5842.703 kb on + strand, within PFLU_RS26140 at 5842.703 kb on + strand, within PFLU_RS26140 at 5842.703 kb on + strand, within PFLU_RS26140 at 5842.704 kb on - strand, within PFLU_RS26140 at 5842.704 kb on - strand, within PFLU_RS26140 at 5842.746 kb on + strand, within PFLU_RS26140 at 5842.758 kb on + strand, within PFLU_RS26140 at 5842.758 kb on + strand, within PFLU_RS26140 at 5842.758 kb on + strand, within PFLU_RS26140 at 5842.758 kb on + strand, within PFLU_RS26140 at 5842.758 kb on + strand, within PFLU_RS26140 at 5842.758 kb on + strand, within PFLU_RS26140 at 5842.758 kb on + strand, within PFLU_RS26140 at 5842.759 kb on - strand, within PFLU_RS26140 at 5842.759 kb on - strand, within PFLU_RS26140 at 5842.759 kb on - strand, within PFLU_RS26140 at 5842.759 kb on - strand, within PFLU_RS26140 at 5842.759 kb on - strand, within PFLU_RS26140 at 5842.759 kb on - strand, within PFLU_RS26140 at 5842.795 kb on + strand, within PFLU_RS26140 at 5842.795 kb on + strand, within PFLU_RS26140 at 5842.795 kb on + strand, within PFLU_RS26140 at 5842.796 kb on - strand, within PFLU_RS26140 at 5842.796 kb on - strand, within PFLU_RS26140 at 5842.796 kb on - strand, within PFLU_RS26140 at 5842.882 kb on + strand, within PFLU_RS26140 at 5842.882 kb on + strand, within PFLU_RS26140 at 5842.882 kb on + strand, within PFLU_RS26140 at 5842.883 kb on - strand, within PFLU_RS26140 at 5842.883 kb on - strand, within PFLU_RS26140 at 5842.911 kb on + strand, within PFLU_RS26140 at 5842.912 kb on - strand, within PFLU_RS26140 at 5842.912 kb on - strand, within PFLU_RS26140 at 5842.912 kb on - strand, within PFLU_RS26140 at 5842.912 kb on - strand, within PFLU_RS26140 at 5842.912 kb on - strand, within PFLU_RS26140 at 5842.912 kb on - strand, within PFLU_RS26140 at 5843.144 kb on - strand, within PFLU_RS26140 at 5843.190 kb on + strand, within PFLU_RS26140 at 5843.190 kb on + strand, within PFLU_RS26140 at 5843.190 kb on + strand, within PFLU_RS26140 at 5843.190 kb on + strand, within PFLU_RS26140 at 5843.190 kb on + strand, within PFLU_RS26140 at 5843.191 kb on - strand, within PFLU_RS26140 at 5843.191 kb on - strand, within PFLU_RS26140 at 5843.223 kb on + strand, within PFLU_RS26140 at 5843.223 kb on + strand, within PFLU_RS26140 at 5843.223 kb on + strand, within PFLU_RS26140 at 5843.224 kb on - strand, within PFLU_RS26140 at 5843.224 kb on - strand, within PFLU_RS26140 at 5843.224 kb on - strand, within PFLU_RS26140 at 5843.224 kb on - strand, within PFLU_RS26140 at 5843.224 kb on - strand, within PFLU_RS26140 at 5843.224 kb on - strand, within PFLU_RS26140 at 5843.275 kb on + strand, within PFLU_RS26140 at 5843.275 kb on + strand, within PFLU_RS26140 at 5843.275 kb on + strand, within PFLU_RS26140 at 5843.275 kb on + strand, within PFLU_RS26140 at 5843.275 kb on + strand, within PFLU_RS26140 at 5843.276 kb on - strand, within PFLU_RS26140 at 5843.367 kb on + strand, within PFLU_RS26140 at 5843.367 kb on + strand, within PFLU_RS26140 at 5843.367 kb on + strand, within PFLU_RS26140 at 5843.367 kb on + strand, within PFLU_RS26140 at 5843.368 kb on - strand, within PFLU_RS26140 at 5843.368 kb on - strand, within PFLU_RS26140 at 5843.368 kb on - strand, within PFLU_RS26140 at 5843.391 kb on + strand at 5843.391 kb on + strand at 5843.391 kb on + strand at 5843.391 kb on + strand at 5843.391 kb on + strand at 5843.391 kb on + strand at 5843.391 kb on + strand at 5843.391 kb on + strand at 5843.391 kb on + strand at 5843.391 kb on + strand at 5843.391 kb on + strand at 5843.392 kb on - strand at 5843.392 kb on - strand at 5843.392 kb on - strand at 5843.433 kb on + strand at 5843.433 kb on + strand at 5843.434 kb on - strand at 5843.434 kb on - strand at 5843.434 kb on - strand at 5843.439 kb on - strand at 5843.460 kb on + strand at 5843.460 kb on + strand at 5843.460 kb on + strand at 5843.460 kb on + strand at 5843.460 kb on + strand at 5843.460 kb on + strand at 5843.460 kb on + strand at 5843.460 kb on + strand at 5843.460 kb on + strand at 5843.460 kb on + strand at 5843.460 kb on + strand at 5843.460 kb on + strand at 5843.460 kb on + strand at 5843.460 kb on + strand at 5843.460 kb on + strand at 5843.460 kb on + strand at 5843.460 kb on + strand at 5843.460 kb on + strand at 5843.460 kb on + strand at 5843.461 kb on - strand at 5843.461 kb on - strand at 5843.461 kb on - strand at 5843.461 kb on - strand at 5843.461 kb on - strand at 5843.461 kb on - strand at 5843.461 kb on - strand at 5843.461 kb on - strand at 5843.461 kb on - strand at 5843.461 kb on - strand at 5843.461 kb on - strand at 5843.461 kb on - strand at 5843.461 kb on - strand at 5843.461 kb on - strand at 5843.461 kb on - strand at 5843.461 kb on - strand at 5843.461 kb on - strand at 5843.466 kb on + strand at 5843.466 kb on + strand at 5843.467 kb on - strand at 5843.467 kb on - strand at 5843.494 kb on - strand at 5843.494 kb on - strand at 5843.494 kb on - strand at 5843.494 kb on - strand at 5843.562 kb on + strand at 5843.562 kb on + strand at 5843.562 kb on + strand at 5843.563 kb on - strand at 5843.563 kb on - strand at 5843.563 kb on - strand at 5843.664 kb on - strand, within PFLU_RS26145 at 5843.839 kb on - strand, within PFLU_RS26145 at 5843.984 kb on - strand at 5844.012 kb on + strand at 5844.012 kb on + strand at 5844.012 kb on + strand at 5844.012 kb on + strand at 5844.029 kb on + strand at 5844.030 kb on - strand at 5844.036 kb on - strand at 5844.036 kb on - strand at 5844.061 kb on - strand at 5844.075 kb on - strand at 5844.075 kb on - strand at 5844.158 kb on + strand at 5844.158 kb on + strand at 5844.158 kb on + strand at 5844.158 kb on + strand at 5844.158 kb on + strand at 5844.159 kb on - strand at 5844.159 kb on - strand at 5844.159 kb on - strand at 5844.159 kb on - strand at 5844.159 kb on - strand at 5844.159 kb on - strand at 5844.159 kb on - strand at 5844.159 kb on - strand at 5844.202 kb on + strand at 5844.202 kb on + strand at 5844.202 kb on + strand at 5844.202 kb on + strand at 5844.202 kb on + strand at 5844.202 kb on + strand at 5844.421 kb on + strand at 5844.421 kb on + strand at 5844.421 kb on + strand at 5844.421 kb on + strand at 5844.421 kb on + strand at 5844.421 kb on + strand at 5844.421 kb on + strand at 5844.421 kb on + strand at 5844.421 kb on + strand at 5844.421 kb on + strand at 5844.421 kb on + strand at 5844.421 kb on + strand at 5844.421 kb on + strand at 5844.421 kb on + strand at 5844.421 kb on + strand at 5844.421 kb on + strand at 5844.422 kb on - strand at 5844.422 kb on - strand at 5844.422 kb on - strand at 5844.422 kb on - strand at 5844.422 kb on - strand at 5844.422 kb on - strand at 5844.422 kb on - strand at 5844.422 kb on - strand at 5844.422 kb on - strand at 5844.422 kb on - strand at 5844.422 kb on - strand at 5844.425 kb on + strand at 5844.425 kb on + strand at 5844.425 kb on + strand at 5844.425 kb on + strand at 5844.425 kb on + strand at 5844.425 kb on + strand at 5844.426 kb on - strand at 5844.426 kb on - strand at 5844.426 kb on - strand at 5844.426 kb on - strand at 5844.426 kb on - strand at 5844.707 kb on - strand, within PFLU_RS26150 at 5844.707 kb on - strand, within PFLU_RS26150 at 5844.712 kb on + strand, within PFLU_RS26150 at 5844.712 kb on + strand, within PFLU_RS26150 at 5844.712 kb on + strand, within PFLU_RS26150 at 5844.766 kb on + strand, within PFLU_RS26150 at 5844.781 kb on + strand, within PFLU_RS26150 at 5844.782 kb on - strand, within PFLU_RS26150 at 5844.854 kb on + strand, within PFLU_RS26150 at 5844.854 kb on + strand, within PFLU_RS26150 at 5844.854 kb on + strand, within PFLU_RS26150 at 5844.871 kb on + strand, within PFLU_RS26150
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs remove 5,842,639 - PFLU_RS26140 0.49 +0.2 5,842,703 + PFLU_RS26140 0.53 -0.2 5,842,703 + PFLU_RS26140 0.53 +1.4 5,842,703 + PFLU_RS26140 0.53 +0.1 5,842,704 - PFLU_RS26140 0.53 -0.7 5,842,704 - PFLU_RS26140 0.53 +2.6 5,842,746 + PFLU_RS26140 0.55 -2.1 5,842,758 + PFLU_RS26140 0.56 +1.0 5,842,758 + PFLU_RS26140 0.56 +3.3 5,842,758 + PFLU_RS26140 0.56 +1.1 5,842,758 + PFLU_RS26140 0.56 +2.1 5,842,758 + PFLU_RS26140 0.56 +1.2 5,842,758 + PFLU_RS26140 0.56 +0.1 5,842,758 + PFLU_RS26140 0.56 -2.1 5,842,759 - PFLU_RS26140 0.56 -0.9 5,842,759 - PFLU_RS26140 0.56 +0.7 5,842,759 - PFLU_RS26140 0.56 -2.9 5,842,759 - PFLU_RS26140 0.56 -1.3 5,842,759 - PFLU_RS26140 0.56 +0.8 5,842,759 - PFLU_RS26140 0.56 -2.5 5,842,795 + PFLU_RS26140 0.58 +0.6 5,842,795 + PFLU_RS26140 0.58 +0.1 5,842,795 + PFLU_RS26140 0.58 -1.0 5,842,796 - PFLU_RS26140 0.58 -0.1 5,842,796 - PFLU_RS26140 0.58 -0.4 5,842,796 - PFLU_RS26140 0.58 +0.8 5,842,882 + PFLU_RS26140 0.63 -2.0 5,842,882 + PFLU_RS26140 0.63 +2.0 5,842,882 + PFLU_RS26140 0.63 -1.6 5,842,883 - PFLU_RS26140 0.63 +0.7 5,842,883 - PFLU_RS26140 0.63 +1.0 5,842,911 + PFLU_RS26140 0.64 +0.6 5,842,912 - PFLU_RS26140 0.64 +1.2 5,842,912 - PFLU_RS26140 0.64 +1.9 5,842,912 - PFLU_RS26140 0.64 +0.4 5,842,912 - PFLU_RS26140 0.64 -0.1 5,842,912 - PFLU_RS26140 0.64 -2.1 5,842,912 - PFLU_RS26140 0.64 -2.0 5,843,144 - PFLU_RS26140 0.77 +3.9 5,843,190 + PFLU_RS26140 0.79 +0.4 5,843,190 + PFLU_RS26140 0.79 -0.4 5,843,190 + PFLU_RS26140 0.79 +0.9 5,843,190 + PFLU_RS26140 0.79 -0.3 5,843,190 + PFLU_RS26140 0.79 +0.2 5,843,191 - PFLU_RS26140 0.79 -1.3 5,843,191 - PFLU_RS26140 0.79 +0.3 5,843,223 + PFLU_RS26140 0.81 +0.3 5,843,223 + PFLU_RS26140 0.81 +0.0 5,843,223 + PFLU_RS26140 0.81 -1.8 5,843,224 - PFLU_RS26140 0.81 -0.6 5,843,224 - PFLU_RS26140 0.81 +0.4 5,843,224 - PFLU_RS26140 0.81 -3.3 5,843,224 - PFLU_RS26140 0.81 -2.9 5,843,224 - PFLU_RS26140 0.81 +0.2 5,843,224 - PFLU_RS26140 0.81 -2.2 5,843,275 + PFLU_RS26140 0.84 -2.0 5,843,275 + PFLU_RS26140 0.84 +0.9 5,843,275 + PFLU_RS26140 0.84 -1.6 5,843,275 + PFLU_RS26140 0.84 -0.7 5,843,275 + PFLU_RS26140 0.84 -0.1 5,843,276 - PFLU_RS26140 0.84 -0.4 5,843,367 + PFLU_RS26140 0.89 -3.6 5,843,367 + PFLU_RS26140 0.89 -0.4 5,843,367 + PFLU_RS26140 0.89 -0.9 5,843,367 + PFLU_RS26140 0.89 -0.8 5,843,368 - PFLU_RS26140 0.89 +0.6 5,843,368 - PFLU_RS26140 0.89 +2.6 5,843,368 - PFLU_RS26140 0.89 +1.1 5,843,391 + -0.1 5,843,391 + +1.9 5,843,391 + -2.8 5,843,391 + -1.1 5,843,391 + +1.3 5,843,391 + -1.4 5,843,391 + -1.1 5,843,391 + -3.2 5,843,391 + -2.1 5,843,391 + -1.6 5,843,391 + -2.8 5,843,392 - +1.7 5,843,392 - +2.7 5,843,392 - -1.1 5,843,433 + -1.3 5,843,433 + +0.7 5,843,434 - +1.4 5,843,434 - -2.5 5,843,434 - -1.3 5,843,439 - +0.4 5,843,460 + +0.2 5,843,460 + -0.5 5,843,460 + -2.5 5,843,460 + -0.3 5,843,460 + -1.6 5,843,460 + +0.8 5,843,460 + +2.7 5,843,460 + -0.0 5,843,460 + +0.3 5,843,460 + -2.5 5,843,460 + -2.9 5,843,460 + -0.1 5,843,460 + -0.2 5,843,460 + +2.0 5,843,460 + -0.3 5,843,460 + +0.4 5,843,460 + +1.7 5,843,460 + -0.7 5,843,460 + -0.1 5,843,461 - +0.1 5,843,461 - +0.3 5,843,461 - -2.7 5,843,461 - -0.3 5,843,461 - -1.0 5,843,461 - -1.1 5,843,461 - -0.9 5,843,461 - +0.0 5,843,461 - +2.2 5,843,461 - -2.3 5,843,461 - -1.5 5,843,461 - +0.1 5,843,461 - +1.5 5,843,461 - +3.1 5,843,461 - +1.9 5,843,461 - -1.7 5,843,461 - +1.0 5,843,466 + -0.3 5,843,466 + -1.7 5,843,467 - -3.9 5,843,467 - -2.9 5,843,494 - -1.6 5,843,494 - -1.9 5,843,494 - +0.6 5,843,494 - -0.9 5,843,562 + +1.0 5,843,562 + +1.2 5,843,562 + +0.3 5,843,563 - +1.7 5,843,563 - +0.5 5,843,563 - -1.9 5,843,664 - PFLU_RS26145 0.29 -0.6 5,843,839 - PFLU_RS26145 0.84 -0.9 5,843,984 - +0.2 5,844,012 + +1.0 5,844,012 + +1.8 5,844,012 + +1.5 5,844,012 + -2.6 5,844,029 + +0.8 5,844,030 - +0.7 5,844,036 - -4.2 5,844,036 - +0.7 5,844,061 - +1.6 5,844,075 - -2.1 5,844,075 - -2.8 5,844,158 + +0.6 5,844,158 + -0.1 5,844,158 + +2.1 5,844,158 + -2.3 5,844,158 + +0.5 5,844,159 - +0.9 5,844,159 - -1.5 5,844,159 - +2.4 5,844,159 - -2.9 5,844,159 - +0.9 5,844,159 - -0.3 5,844,159 - +0.3 5,844,159 - +0.8 5,844,202 + +0.8 5,844,202 + +1.4 5,844,202 + +0.8 5,844,202 + +1.1 5,844,202 + +2.1 5,844,202 + +1.0 5,844,421 + -1.3 5,844,421 + +1.4 5,844,421 + -1.0 5,844,421 + -2.2 5,844,421 + -2.4 5,844,421 + -0.6 5,844,421 + +0.6 5,844,421 + -0.2 5,844,421 + -1.3 5,844,421 + -0.9 5,844,421 + +0.3 5,844,421 + +1.0 5,844,421 + +0.5 5,844,421 + +1.8 5,844,421 + -0.1 5,844,421 + +1.2 5,844,422 - -0.7 5,844,422 - +2.9 5,844,422 - -0.4 5,844,422 - -3.4 5,844,422 - -0.3 5,844,422 - +1.1 5,844,422 - -1.6 5,844,422 - -3.3 5,844,422 - +2.0 5,844,422 - -0.9 5,844,422 - -2.0 5,844,425 + +0.6 5,844,425 + -0.6 5,844,425 + +1.4 5,844,425 + -2.0 5,844,425 + -2.9 5,844,425 + +0.5 5,844,426 - -0.4 5,844,426 - +0.9 5,844,426 - +0.2 5,844,426 - -2.7 5,844,426 - -1.9 5,844,707 - PFLU_RS26150 0.20 -0.3 5,844,707 - PFLU_RS26150 0.20 +0.1 5,844,712 + PFLU_RS26150 0.21 +1.7 5,844,712 + PFLU_RS26150 0.21 +0.9 5,844,712 + PFLU_RS26150 0.21 -0.9 5,844,766 + PFLU_RS26150 0.23 +0.7 5,844,781 + PFLU_RS26150 0.23 +1.7 5,844,782 - PFLU_RS26150 0.23 +1.7 5,844,854 + PFLU_RS26150 0.26 -2.5 5,844,854 + PFLU_RS26150 0.26 -2.7 5,844,854 + PFLU_RS26150 0.26 +0.2 5,844,871 + PFLU_RS26150 0.27 -1.8
Or see this region's nucleotide sequence