Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS22360

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs
5,027,191	-		PFLU_RS22355	0.37	+1.2
5,027,330	-		PFLU_RS22355	0.52	+1.1
5,027,644	+		PFLU_RS22355	0.84	-0.1
5,027,644	+		PFLU_RS22355	0.84	+0.9
5,027,644	+		PFLU_RS22355	0.84	-0.2
5,027,645	-		PFLU_RS22355	0.84	+0.8
5,027,645	-		PFLU_RS22355	0.84	+1.1
5,027,645	-		PFLU_RS22355	0.84	-1.7
5,027,645	-		PFLU_RS22355	0.84	-4.1
5,027,645	-		PFLU_RS22355	0.84	+1.0
5,027,755	+				+1.9
5,027,755	+				-0.4
5,027,755	+				-0.3
5,027,755	+				+1.1
5,027,755	+				+0.3
5,027,755	+				+0.5
5,027,755	+				+0.3
5,027,755	+				-2.4
5,027,756	-				-2.2
5,027,756	-				+0.7
5,027,756	-				+0.3
5,027,756	-				-0.8
5,027,756	-				-0.7
5,027,756	-				-1.8
5,027,756	-				+0.4
5,027,756	-				+3.0
5,027,756	-				+2.0
5,027,756	-				+1.5
5,027,761	+				+0.8
5,027,761	+				-2.3
5,027,761	+				+1.0
5,027,762	-				-0.4
5,027,762	-				-1.7
5,027,762	-				+0.1
5,027,781	+				-0.4
5,027,781	+				-2.8
5,027,781	+				+0.4
5,027,781	+				-2.6
5,027,782	-				+0.5
5,027,782	-				+0.8
5,027,782	-				+0.0
5,027,800	+				-1.6
5,027,800	+				+0.2
5,027,800	+				+2.0
5,027,800	+				-0.1
5,027,801	-				+1.7
5,027,801	-				+1.7
5,027,816	-				-1.5
5,027,816	-				+0.2
5,027,816	-				+1.0
5,027,816	-				+1.1
5,027,959	+				-2.6
5,027,959	+				+1.5
5,027,959	+				+0.8
5,027,959	+				-2.9
5,027,959	+				+1.2
5,027,959	+				-2.6
5,027,959	+				+0.4
5,027,960	-				-0.3
5,027,960	-				-2.8
5,027,960	-				+0.5
5,027,960	-				-3.0
5,027,960	-				-2.5
5,027,960	-				-3.2
5,027,989	+				+0.0
5,027,989	+				+0.0
5,027,989	+				-2.6
5,027,990	-				-0.2
5,027,990	-				-2.0
5,028,040	+				-1.4
5,028,040	+				-1.3
5,028,040	+				+0.2
5,028,040	+				-3.1
5,028,040	+				-0.5
5,028,040	+				+1.4
5,028,041	-				-1.1
5,028,041	-				-0.3
5,028,041	-				-2.4
5,028,041	-				-0.3
5,028,041	-				-2.2
5,028,041	-				+5.6
5,028,041	-				-2.3
5,028,041	-				+1.7
5,028,041	-				+1.1
5,028,041	-				-1.6
5,028,043	+				-2.2
5,028,054	+				-0.3
5,028,055	-				-1.6
5,028,055	-				-2.7
5,028,060	+				-0.3
5,028,060	+				-4.1
5,028,060	+				+0.0
5,028,060	+				-1.3
5,028,061	-				-1.4
5,028,061	-				+2.6
5,028,061	-				-2.2
5,028,061	-				-2.2
5,028,061	-				-1.0
5,028,101	+				-2.6
5,028,102	-				-2.8
5,028,102	-				-1.6
5,028,102	-				-1.4
5,028,102	-				+0.2
5,028,102	-				-0.6
5,028,102	-				-1.1
5,028,154	+				+0.4
5,028,160	+				+0.2
5,028,160	+				+0.8
5,028,160	+				-1.8
5,028,160	+				-0.4
5,028,160	+				-1.4
5,028,160	+				+1.5
5,028,160	+				-0.2
5,028,160	+				+1.8
5,028,161	-				+3.2
5,028,161	-				-0.2
5,028,161	-				+0.8
5,028,161	-				+0.8
5,028,161	-				+0.8
5,028,161	-				+0.8
5,028,161	-				+0.8
5,028,161	-				+4.6
5,028,161	-				+0.8
5,028,161	-				-0.2
5,028,161	-				-1.2
5,028,161	-				+1.8
5,028,206	+				-1.1
5,028,207	-				+1.3
5,028,243	+				-0.2
5,028,244	-				+0.8
5,028,244	-				-0.2
5,028,273	-				+0.2
5,028,312	+		PFLU_RS22360	0.12	+1.8
5,028,312	+		PFLU_RS22360	0.12	+1.8
5,028,313	-		PFLU_RS22360	0.12	+0.8
5,028,313	-		PFLU_RS22360	0.12	+3.3
5,028,377	+		PFLU_RS22360	0.17	+0.8
5,028,377	+		PFLU_RS22360	0.17	-2.2
5,028,377	+		PFLU_RS22360	0.17	+1.8
5,028,377	+		PFLU_RS22360	0.17	+0.2
5,028,377	+		PFLU_RS22360	0.17	+0.2
5,028,377	+		PFLU_RS22360	0.17	+1.8
5,028,377	+		PFLU_RS22360	0.17	+0.2
5,028,377	+		PFLU_RS22360	0.17	-1.4
5,028,377	+		PFLU_RS22360	0.17	+0.2
5,028,377	+		PFLU_RS22360	0.17	-1.2
5,028,378	-		PFLU_RS22360	0.17	+0.8
5,028,378	-		PFLU_RS22360	0.17	+0.2
5,028,378	-		PFLU_RS22360	0.17	-0.2
5,028,378	-		PFLU_RS22360	0.17	+0.8
5,028,378	-		PFLU_RS22360	0.17	-0.2
5,028,378	-		PFLU_RS22360	0.17	+2.8
5,028,378	-		PFLU_RS22360	0.17	+0.8
5,028,378	-		PFLU_RS22360	0.17	+0.2
5,028,378	-		PFLU_RS22360	0.17	+4.1
5,028,378	-		PFLU_RS22360	0.17	+0.2
5,028,378	-		PFLU_RS22360	0.17	+0.8
5,028,378	-		PFLU_RS22360	0.17	-0.8
5,028,378	-		PFLU_RS22360	0.17	+1.8
5,028,386	+		PFLU_RS22360	0.17	-1.1
5,028,386	+		PFLU_RS22360	0.17	-1.2
5,028,386	+		PFLU_RS22360	0.17	+0.8
5,028,387	-		PFLU_RS22360	0.17	-0.6
5,028,435	-		PFLU_RS22360	0.21	-0.6
5,028,435	-		PFLU_RS22360	0.21	+1.8
5,028,467	+		PFLU_RS22360	0.23	-0.2
5,028,468	-		PFLU_RS22360	0.23	+0.2
5,028,478	-		PFLU_RS22360	0.24	+1.8
5,028,478	-		PFLU_RS22360	0.24	-0.8
5,028,478	-		PFLU_RS22360	0.24	-1.4
5,028,478	-		PFLU_RS22360	0.24	+0.2
5,028,478	-		PFLU_RS22360	0.24	+1.8
5,028,501	+		PFLU_RS22360	0.25	-0.2
5,028,501	+		PFLU_RS22360	0.25	-0.2
5,028,501	+		PFLU_RS22360	0.25	-0.8
5,028,502	-		PFLU_RS22360	0.25	+0.8
5,028,503	+		PFLU_RS22360	0.25	-0.8
5,028,503	+		PFLU_RS22360	0.25	-0.2
5,028,503	+		PFLU_RS22360	0.25	+0.2
5,028,503	+		PFLU_RS22360	0.25	+4.2
5,028,503	+		PFLU_RS22360	0.25	-0.2
5,028,503	+		PFLU_RS22360	0.25	+0.2
5,028,503	+		PFLU_RS22360	0.25	+1.2
5,028,504	-		PFLU_RS22360	0.25	-1.2
5,028,504	-		PFLU_RS22360	0.25	+1.8
5,028,504	-		PFLU_RS22360	0.25	-0.2
5,028,504	-		PFLU_RS22360	0.25	-0.2
5,028,504	-		PFLU_RS22360	0.25	-1.1
5,028,504	-		PFLU_RS22360	0.25	-0.2
5,028,504	-		PFLU_RS22360	0.25	+0.2
5,028,504	-		PFLU_RS22360	0.25	-0.6
5,028,504	-		PFLU_RS22360	0.25	+0.2
5,028,504	-		PFLU_RS22360	0.25	-0.6
5,028,520	+		PFLU_RS22360	0.27	-0.2
5,028,520	+		PFLU_RS22360	0.27	+0.2
5,028,521	-		PFLU_RS22360	0.27	-0.8
5,028,521	-		PFLU_RS22360	0.27	+0.2
5,028,750	+		PFLU_RS22360	0.43	-1.6
5,028,750	+		PFLU_RS22360	0.43	-1.6
5,028,751	-		PFLU_RS22360	0.43	-0.8
5,028,783	+		PFLU_RS22360	0.45	-1.8
5,028,783	+		PFLU_RS22360	0.45	-0.8
5,028,783	+		PFLU_RS22360	0.45	+0.8
5,028,783	+		PFLU_RS22360	0.45	-0.6
5,028,783	+		PFLU_RS22360	0.45	-0.6
5,028,783	+		PFLU_RS22360	0.45	-1.9
5,028,784	-		PFLU_RS22360	0.45	+1.8
5,028,784	-		PFLU_RS22360	0.45	+0.2
5,028,784	-		PFLU_RS22360	0.45	-0.8
5,028,784	-		PFLU_RS22360	0.45	+0.2
5,028,784	-		PFLU_RS22360	0.45	-0.2
5,028,784	-		PFLU_RS22360	0.45	-0.2
5,028,822	+		PFLU_RS22360	0.48	+3.0
5,028,822	+		PFLU_RS22360	0.48	-2.1
5,028,822	+		PFLU_RS22360	0.48	-1.2
5,028,822	+		PFLU_RS22360	0.48	-1.6
5,028,822	+		PFLU_RS22360	0.48	+0.8
5,028,822	+		PFLU_RS22360	0.48	-0.6
5,028,822	+		PFLU_RS22360	0.48	+1.8
5,028,822	+		PFLU_RS22360	0.48	+2.1
5,028,822	+		PFLU_RS22360	0.48	-1.9
5,028,822	+		PFLU_RS22360	0.48	-1.6
5,028,822	+		PFLU_RS22360	0.48	+0.2
5,028,822	+		PFLU_RS22360	0.48	-1.7
5,028,822	+		PFLU_RS22360	0.48	+0.2
5,028,822	+		PFLU_RS22360	0.48	+2.5
5,028,822	+		PFLU_RS22360	0.48	+2.0
5,028,822	+		PFLU_RS22360	0.48	+0.8
5,028,822	+		PFLU_RS22360	0.48	-1.8
5,028,822	+		PFLU_RS22360	0.48	+0.8
5,028,822	+		PFLU_RS22360	0.48	-0.8
5,028,822	+		PFLU_RS22360	0.48	-1.6
5,028,822	+		PFLU_RS22360	0.48	-1.4
5,028,822	+		PFLU_RS22360	0.48	+0.8
5,028,822	+		PFLU_RS22360	0.48	-1.4
5,028,822	+		PFLU_RS22360	0.48	-0.2
5,028,822	+		PFLU_RS22360	0.48	+1.8
5,028,822	+		PFLU_RS22360	0.48	+3.6
5,028,822	+		PFLU_RS22360	0.48	+0.2
5,028,822	+		PFLU_RS22360	0.48	-0.6
5,028,823	-		PFLU_RS22360	0.48	-1.2
5,028,823	-		PFLU_RS22360	0.48	-1.6
5,028,823	-		PFLU_RS22360	0.48	+1.8
5,028,823	-		PFLU_RS22360	0.48	-0.2
5,028,823	-		PFLU_RS22360	0.48	+0.8
5,028,823	-		PFLU_RS22360	0.48	-0.6
5,028,823	-		PFLU_RS22360	0.48	-1.7
5,028,823	-		PFLU_RS22360	0.48	+1.8
5,028,823	-		PFLU_RS22360	0.48	+0.2
5,028,823	-		PFLU_RS22360	0.48	-1.4
5,028,823	-		PFLU_RS22360	0.48	+1.8
5,028,823	-		PFLU_RS22360	0.48	-0.8
5,028,823	-		PFLU_RS22360	0.48	+1.8
5,028,823	-		PFLU_RS22360	0.48	-0.8
5,028,823	-		PFLU_RS22360	0.48	+0.8
5,028,823	-		PFLU_RS22360	0.48	-0.2
5,028,823	-		PFLU_RS22360	0.48	+0.2
5,028,823	-		PFLU_RS22360	0.48	+1.8
5,028,823	-		PFLU_RS22360	0.48	-1.1
5,028,823	-		PFLU_RS22360	0.48	-1.4
5,028,823	-		PFLU_RS22360	0.48	-1.2
5,028,823	-		PFLU_RS22360	0.48	+1.8
5,028,823	-		PFLU_RS22360	0.48	-2.4
5,028,823	-		PFLU_RS22360	0.48	+0.8
5,028,823	-		PFLU_RS22360	0.48	+0.8
5,028,823	-		PFLU_RS22360	0.48	+1.8
5,028,823	-		PFLU_RS22360	0.48	-0.6
5,028,823	-		PFLU_RS22360	0.48	+1.8
5,028,823	-		PFLU_RS22360	0.48	+0.2
5,028,823	-		PFLU_RS22360	0.48	+2.5
5,028,823	-		PFLU_RS22360	0.48	-1.4
5,028,823	-		PFLU_RS22360	0.48	-1.7
5,028,823	-		PFLU_RS22360	0.48	-0.8
5,028,823	-		PFLU_RS22360	0.48	-0.6
5,028,823	-		PFLU_RS22360	0.48	+0.8
5,028,823	-		PFLU_RS22360	0.48	+0.8
5,028,823	-		PFLU_RS22360	0.48	+0.2
5,028,823	-		PFLU_RS22360	0.48	+0.8
5,028,835	-		PFLU_RS22360	0.49	+0.2
5,028,936	+		PFLU_RS22360	0.56	-1.6
5,028,936	+		PFLU_RS22360	0.56	-1.8
5,028,936	+		PFLU_RS22360	0.56	+1.9
5,028,936	+		PFLU_RS22360	0.56	-1.6
5,028,936	+		PFLU_RS22360	0.56	+1.3
5,028,936	+		PFLU_RS22360	0.56	+1.3
5,028,937	-		PFLU_RS22360	0.56	-0.6
5,028,937	-		PFLU_RS22360	0.56	-0.8
5,029,053	-		PFLU_RS22360	0.64	-0.2
5,029,110	+		PFLU_RS22360	0.68	-1.6
5,029,110	+		PFLU_RS22360	0.68	+0.8
5,029,110	+		PFLU_RS22360	0.68	+2.1
5,029,111	-		PFLU_RS22360	0.68	-1.2
5,029,111	-		PFLU_RS22360	0.68	-0.8
5,029,183	+		PFLU_RS22360	0.73	-2.2
5,029,184	-		PFLU_RS22360	0.73	+0.2
5,029,184	-		PFLU_RS22360	0.73	+1.8
5,029,270	-		PFLU_RS22360	0.79	-1.1
5,029,305	+		PFLU_RS22360	0.82	+0.8
5,029,305	+		PFLU_RS22360	0.82	-0.6
5,029,306	-		PFLU_RS22360	0.82	-0.2
5,029,306	-		PFLU_RS22360	0.82	-0.6
5,029,347	+		PFLU_RS22360	0.84	+2.2
5,029,347	+		PFLU_RS22360	0.84	-0.8
5,029,347	+		PFLU_RS22360	0.84	-1.4
5,029,347	+		PFLU_RS22360	0.84	-1.7
5,029,347	+		PFLU_RS22360	0.84	-0.9
5,029,347	+		PFLU_RS22360	0.84	-3.1
5,029,347	+		PFLU_RS22360	0.84	-2.3
5,029,347	+		PFLU_RS22360	0.84	-1.7
5,029,347	+		PFLU_RS22360	0.84	+0.2
5,029,347	+		PFLU_RS22360	0.84	-1.8
5,029,347	+		PFLU_RS22360	0.84	-1.4
5,029,347	+		PFLU_RS22360	0.84	+1.5
5,029,347	+		PFLU_RS22360	0.84	-0.6
5,029,347	+		PFLU_RS22360	0.84	-1.2
5,029,347	+		PFLU_RS22360	0.84	+1.8
5,029,348	-		PFLU_RS22360	0.85	+0.8
5,029,348	-		PFLU_RS22360	0.85	-0.2
5,029,348	-		PFLU_RS22360	0.85	-2.5
5,029,348	-		PFLU_RS22360	0.85	-0.6
5,029,348	-		PFLU_RS22360	0.85	-0.2
5,029,348	-		PFLU_RS22360	0.85	+0.8
5,029,348	-		PFLU_RS22360	0.85	-0.6
5,029,348	-		PFLU_RS22360	0.85	-1.4
5,029,348	-		PFLU_RS22360	0.85	+0.8
5,029,348	-		PFLU_RS22360	0.85	-2.6
5,029,348	-		PFLU_RS22360	0.85	-1.9
5,029,348	-		PFLU_RS22360	0.85	+2.9
5,029,348	-		PFLU_RS22360	0.85	-0.8
5,029,348	-		PFLU_RS22360	0.85	-1.1
5,029,348	-		PFLU_RS22360	0.85	-0.2
5,029,597	+				+0.2
5,029,620	+				-0.6
5,029,620	+				+0.8
5,029,620	+				+0.2
5,029,620	+				-0.2
5,029,620	+				+0.2
5,029,620	+				+0.8
5,029,620	+				+0.2
5,029,620	+				+0.8
5,029,620	+				+1.8
5,029,621	-				+1.8
5,029,621	-				+0.2
5,029,621	-				-1.2
5,029,621	-				-0.2
5,029,621	-				+4.4
5,029,621	-				+1.8
5,029,621	-				+3.4
5,029,621	-				-0.6
5,029,621	-				+1.8
5,029,621	-				+1.4
5,029,621	-				+2.8
5,029,621	-				-0.6
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