Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS19085

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs
4,314,438	+				+1.2
4,314,439	-				+1.4
4,314,464	-				+0.2
4,314,724	+		PFLU_RS19080	0.32	+2.1
4,314,724	+		PFLU_RS19080	0.32	-0.0
4,314,724	+		PFLU_RS19080	0.32	+2.3
4,314,724	+		PFLU_RS19080	0.32	-0.4
4,314,725	-		PFLU_RS19080	0.32	+1.0
4,314,725	-		PFLU_RS19080	0.32	-2.3
4,314,725	-		PFLU_RS19080	0.32	+0.7
4,314,725	-		PFLU_RS19080	0.32	+0.3
4,314,725	-		PFLU_RS19080	0.32	-2.3
4,314,898	+		PFLU_RS19080	0.53	-0.1
4,314,898	+		PFLU_RS19080	0.53	-2.7
4,314,898	+		PFLU_RS19080	0.53	-1.7
4,314,898	+		PFLU_RS19080	0.53	+2.1
4,314,898	+		PFLU_RS19080	0.53	-2.5
4,314,899	-		PFLU_RS19080	0.53	+0.6
4,315,108	+		PFLU_RS19080	0.79	+0.3
4,315,108	+		PFLU_RS19080	0.79	-0.5
4,315,108	+		PFLU_RS19080	0.79	-0.9
4,315,108	+		PFLU_RS19080	0.79	+0.2
4,315,108	+		PFLU_RS19080	0.79	-1.8
4,315,108	+		PFLU_RS19080	0.79	+0.0
4,315,108	+		PFLU_RS19080	0.79	-1.3
4,315,108	+		PFLU_RS19080	0.79	-0.1
4,315,108	+		PFLU_RS19080	0.79	+0.4
4,315,108	+		PFLU_RS19080	0.79	-0.9
4,315,109	-		PFLU_RS19080	0.79	+1.1
4,315,109	-		PFLU_RS19080	0.79	-0.9
4,315,109	-		PFLU_RS19080	0.79	-0.1
4,315,109	-		PFLU_RS19080	0.79	+0.1
4,315,109	-		PFLU_RS19080	0.79	-0.5
4,315,109	-		PFLU_RS19080	0.79	+0.2
4,315,109	-		PFLU_RS19080	0.79	-4.3
4,315,109	-		PFLU_RS19080	0.79	+0.8
4,315,109	-		PFLU_RS19080	0.79	-1.3
4,315,109	-		PFLU_RS19080	0.79	-3.8
4,315,195	+		PFLU_RS19080	0.89	-2.4
4,315,196	-		PFLU_RS19080	0.89	+1.1
4,315,196	-		PFLU_RS19080	0.89	-1.1
4,315,196	-		PFLU_RS19080	0.89	-1.9
4,315,325	+				+1.4
4,315,336	+				-0.1
4,315,336	+				+2.6
4,315,336	+				+1.2
4,315,336	+				+1.0
4,315,336	+				+2.0
4,315,337	-				-1.5
4,315,337	-				+1.4
4,315,337	-				+1.0
4,315,337	-				-1.8
4,315,337	-				+0.4
4,315,337	-				+1.3
4,315,337	-				-2.4
4,315,337	-				-1.1
4,315,337	-				-0.4
4,315,337	-				-3.3
4,315,341	+				+0.7
4,315,342	-				-0.4
4,315,342	-				+0.2
4,315,342	-				+1.2
4,315,426	+				+0.3
4,315,427	-				+1.1
4,315,469	+		PFLU_RS19085	0.13	-3.6
4,315,469	+		PFLU_RS19085	0.13	+0.2
4,315,469	+		PFLU_RS19085	0.13	+0.4
4,315,470	-		PFLU_RS19085	0.13	-1.7
4,315,470	-		PFLU_RS19085	0.13	+0.8
4,315,483	+		PFLU_RS19085	0.15	+1.6
4,315,483	+		PFLU_RS19085	0.15	-2.7
4,315,483	+		PFLU_RS19085	0.15	+2.3
4,315,483	+		PFLU_RS19085	0.15	+0.9
4,315,484	-		PFLU_RS19085	0.15	+0.4
4,315,499	+		PFLU_RS19085	0.18	-0.9
4,315,499	+		PFLU_RS19085	0.18	+0.9
4,315,499	+		PFLU_RS19085	0.18	+1.0
4,315,500	-		PFLU_RS19085	0.18	-1.5
4,315,500	-		PFLU_RS19085	0.18	+1.1
4,315,557	+		PFLU_RS19085	0.28	-0.0
4,315,557	+		PFLU_RS19085	0.28	+0.6
4,315,557	+		PFLU_RS19085	0.28	+0.2
4,315,557	+		PFLU_RS19085	0.28	+1.5
4,315,558	-		PFLU_RS19085	0.28	-1.5
4,315,558	-		PFLU_RS19085	0.28	+1.9
4,315,558	-		PFLU_RS19085	0.28	-2.2
4,315,558	-		PFLU_RS19085	0.28	-2.5
4,315,689	-		PFLU_RS19085	0.52	+0.6
4,315,690	+		PFLU_RS19085	0.52	-2.1
4,315,690	+		PFLU_RS19085	0.52	+1.4
4,315,690	+		PFLU_RS19085	0.52	-0.9
4,315,690	+		PFLU_RS19085	0.52	-1.9
4,315,690	+		PFLU_RS19085	0.52	-0.5
4,315,690	+		PFLU_RS19085	0.52	+1.0
4,315,691	-		PFLU_RS19085	0.52	+1.8
4,315,691	-		PFLU_RS19085	0.52	+0.4
4,315,691	-		PFLU_RS19085	0.52	+1.0
4,315,691	-		PFLU_RS19085	0.52	-3.5
4,315,691	-		PFLU_RS19085	0.52	+0.8
4,315,691	-		PFLU_RS19085	0.52	+0.1
4,315,691	-		PFLU_RS19085	0.52	-3.1
4,315,691	-		PFLU_RS19085	0.52	-0.2
4,315,762	+		PFLU_RS19085	0.65	+1.5
4,315,762	+		PFLU_RS19085	0.65	-3.4
4,315,762	+		PFLU_RS19085	0.65	-0.2
4,315,762	+		PFLU_RS19085	0.65	-1.8
4,315,762	+		PFLU_RS19085	0.65	-0.9
4,315,763	-		PFLU_RS19085	0.65	-3.3
4,315,763	-		PFLU_RS19085	0.65	+0.9
4,315,763	-		PFLU_RS19085	0.65	+0.1
4,315,763	-		PFLU_RS19085	0.65	+2.5
4,315,763	-		PFLU_RS19085	0.65	+0.9
4,315,763	-		PFLU_RS19085	0.65	-1.1
4,315,763	-		PFLU_RS19085	0.65	-2.4
4,315,853	-		PFLU_RS19085	0.81	+0.6
4,315,897	+		PFLU_RS19085	0.89	+0.7
4,315,897	+		PFLU_RS19085	0.89	+0.4
4,315,897	+		PFLU_RS19085	0.89	-0.7
4,315,897	+		PFLU_RS19085	0.89	-1.9
4,315,897	+		PFLU_RS19085	0.89	-0.3
4,315,897	+		PFLU_RS19085	0.89	-1.5
4,315,897	+		PFLU_RS19085	0.89	-2.4
4,315,897	+		PFLU_RS19085	0.89	-2.1
4,315,897	+		PFLU_RS19085	0.89	-0.6
4,315,897	+		PFLU_RS19085	0.89	-0.5
4,315,897	+		PFLU_RS19085	0.89	+0.4
4,315,897	+		PFLU_RS19085	0.89	+0.6
4,315,897	+		PFLU_RS19085	0.89	-2.9
4,315,897	+		PFLU_RS19085	0.89	-0.1
4,315,897	+		PFLU_RS19085	0.89	+1.9
4,315,897	+		PFLU_RS19085	0.89	-1.3
4,315,897	+		PFLU_RS19085	0.89	+2.3
4,315,897	+		PFLU_RS19085	0.89	-0.1
4,315,897	+		PFLU_RS19085	0.89	+0.3
4,315,898	-		PFLU_RS19085	0.89	-1.0
4,315,898	-		PFLU_RS19085	0.89	+0.6
4,315,898	-		PFLU_RS19085	0.89	+2.1
4,315,898	-		PFLU_RS19085	0.89	+1.2
4,315,898	-		PFLU_RS19085	0.89	+0.5
4,315,898	-		PFLU_RS19085	0.89	+1.4
4,315,898	-		PFLU_RS19085	0.89	+0.3
4,315,898	-		PFLU_RS19085	0.89	-1.8
4,315,898	-		PFLU_RS19085	0.89	-1.6
4,315,898	-		PFLU_RS19085	0.89	-2.5
4,315,898	-		PFLU_RS19085	0.89	+0.5
4,315,898	-		PFLU_RS19085	0.89	-0.6
4,315,898	-		PFLU_RS19085	0.89	-2.0
4,315,898	-		PFLU_RS19085	0.89	+1.3
4,315,898	-		PFLU_RS19085	0.89	+0.6
4,315,898	-		PFLU_RS19085	0.89	-0.5
4,315,898	-		PFLU_RS19085	0.89	+1.0
4,315,898	-		PFLU_RS19085	0.89	-2.0
4,315,898	-		PFLU_RS19085	0.89	-1.1
4,315,898	-		PFLU_RS19085	0.89	-1.5
4,315,898	-		PFLU_RS19085	0.89	-0.4
4,315,898	-		PFLU_RS19085	0.89	-1.7
4,315,898	-		PFLU_RS19085	0.89	+0.5
4,315,948	-				+0.0
4,316,042	+		PFLU_RS19090	0.11	-1.4
4,316,068	-		PFLU_RS19090	0.14	-0.7
4,316,068	-		PFLU_RS19090	0.14	+0.5
4,316,068	-		PFLU_RS19090	0.14	+0.7
4,316,245	-		PFLU_RS19090	0.34	+0.1
4,316,326	-		PFLU_RS19090	0.43	+0.7
4,316,348	+		PFLU_RS19090	0.45	+1.7
4,316,348	+		PFLU_RS19090	0.45	+0.9
4,316,348	+		PFLU_RS19090	0.45	-1.1
4,316,349	-		PFLU_RS19090	0.46	+1.6
4,316,349	-		PFLU_RS19090	0.46	+0.1
4,316,439	+		PFLU_RS19090	0.56	-1.1
4,316,497	-		PFLU_RS19090	0.62	-0.8
4,316,497	-		PFLU_RS19090	0.62	-1.8
4,316,637	+		PFLU_RS19090	0.78	-0.3
4,316,637	+		PFLU_RS19090	0.78	+0.8
4,316,638	-		PFLU_RS19090	0.78	-1.0
4,316,866	+				+0.5
4,316,867	-				+1.1
4,316,867	-				-1.7
4,316,867	-				-2.9
4,316,889	+				+0.4
4,316,889	+				+0.8
4,316,889	+				+0.5
4,316,889	+				+0.9
4,316,889	+				-1.9
4,316,889	+				-1.1
4,316,890	-				+0.7
4,316,890	-				-3.2
4,316,890	-				-3.8
4,316,890	-				-2.0
4,316,890	-				-2.2