Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS18820

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPFLU_RS18815 and PFLU_RS18820 overlap by 1 nucleotidesPFLU_RS18820 and PFLU_RS18825 are separated by 13 nucleotides PFLU_RS18815: PFLU_RS18815 - LLM class flavin-dependent oxidoreductase, at 4,253,712 to 4,255,145 _RS18815 PFLU_RS18820: PFLU_RS18820 - acyl-CoA dehydrogenase, at 4,255,145 to 4,255,471 _RS18820 PFLU_RS18825: PFLU_RS18825 - SfnB family sulfur acquisition oxidoreductase, at 4,255,485 to 4,256,681 _RS18825 Position (kb) 4255 4256Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4254.232 kb on + strand, within PFLU_RS18815at 4254.232 kb on + strand, within PFLU_RS18815at 4254.232 kb on + strand, within PFLU_RS18815at 4254.232 kb on + strand, within PFLU_RS18815at 4254.233 kb on - strand, within PFLU_RS18815at 4254.233 kb on - strand, within PFLU_RS18815at 4254.241 kb on + strand, within PFLU_RS18815at 4254.241 kb on + strand, within PFLU_RS18815at 4254.242 kb on - strand, within PFLU_RS18815at 4254.242 kb on - strand, within PFLU_RS18815at 4254.242 kb on - strand, within PFLU_RS18815at 4254.250 kb on + strand, within PFLU_RS18815at 4254.250 kb on + strand, within PFLU_RS18815at 4254.251 kb on - strand, within PFLU_RS18815at 4254.251 kb on - strand, within PFLU_RS18815at 4254.251 kb on - strand, within PFLU_RS18815at 4254.251 kb on - strand, within PFLU_RS18815at 4254.414 kb on + strand, within PFLU_RS18815at 4254.414 kb on + strand, within PFLU_RS18815at 4254.415 kb on - strand, within PFLU_RS18815at 4254.415 kb on - strand, within PFLU_RS18815at 4254.473 kb on - strand, within PFLU_RS18815at 4254.473 kb on - strand, within PFLU_RS18815at 4254.473 kb on - strand, within PFLU_RS18815at 4254.640 kb on + strand, within PFLU_RS18815at 4254.641 kb on - strand, within PFLU_RS18815at 4254.641 kb on - strand, within PFLU_RS18815at 4254.655 kb on + strand, within PFLU_RS18815at 4254.655 kb on + strand, within PFLU_RS18815at 4254.655 kb on + strand, within PFLU_RS18815at 4254.655 kb on + strand, within PFLU_RS18815at 4254.656 kb on - strand, within PFLU_RS18815at 4254.656 kb on - strand, within PFLU_RS18815at 4254.667 kb on + strand, within PFLU_RS18815at 4254.733 kb on + strand, within PFLU_RS18815at 4254.734 kb on - strand, within PFLU_RS18815at 4254.734 kb on - strand, within PFLU_RS18815at 4254.734 kb on - strand, within PFLU_RS18815at 4254.734 kb on - strand, within PFLU_RS18815at 4254.949 kb on + strand, within PFLU_RS18815at 4254.950 kb on - strand, within PFLU_RS18815at 4254.950 kb on - strand, within PFLU_RS18815at 4254.950 kb on - strand, within PFLU_RS18815at 4254.950 kb on - strand, within PFLU_RS18815at 4254.950 kb on - strand, within PFLU_RS18815at 4254.958 kb on + strand, within PFLU_RS18815at 4254.958 kb on + strand, within PFLU_RS18815at 4254.958 kb on + strand, within PFLU_RS18815at 4254.958 kb on + strand, within PFLU_RS18815at 4254.958 kb on + strand, within PFLU_RS18815at 4254.958 kb on + strand, within PFLU_RS18815at 4254.958 kb on + strand, within PFLU_RS18815at 4254.958 kb on + strand, within PFLU_RS18815at 4254.958 kb on + strand, within PFLU_RS18815at 4254.958 kb on + strand, within PFLU_RS18815at 4254.958 kb on + strand, within PFLU_RS18815at 4254.958 kb on + strand, within PFLU_RS18815at 4254.958 kb on + strand, within PFLU_RS18815at 4254.959 kb on - strand, within PFLU_RS18815at 4254.959 kb on - strand, within PFLU_RS18815at 4254.959 kb on - strand, within PFLU_RS18815at 4254.959 kb on - strand, within PFLU_RS18815at 4254.959 kb on - strand, within PFLU_RS18815at 4254.959 kb on - strand, within PFLU_RS18815at 4254.959 kb on - strand, within PFLU_RS18815at 4254.959 kb on - strand, within PFLU_RS18815at 4254.959 kb on - strand, within PFLU_RS18815at 4254.959 kb on - strand, within PFLU_RS18815at 4254.959 kb on - strand, within PFLU_RS18815at 4255.033 kb on + strandat 4255.033 kb on + strandat 4255.048 kb on + strandat 4255.048 kb on + strandat 4255.048 kb on + strandat 4255.049 kb on - strandat 4255.049 kb on - strandat 4255.049 kb on - strandat 4255.049 kb on - strandat 4255.049 kb on - strandat 4255.049 kb on - strandat 4255.167 kb on + strandat 4255.167 kb on + strandat 4255.167 kb on + strandat 4255.167 kb on + strandat 4255.167 kb on + strandat 4255.167 kb on + strandat 4255.167 kb on + strandat 4255.167 kb on + strandat 4255.167 kb on + strandat 4255.167 kb on + strandat 4255.167 kb on + strandat 4255.167 kb on + strandat 4255.167 kb on + strandat 4255.167 kb on + strandat 4255.167 kb on + strandat 4255.167 kb on + strandat 4255.168 kb on - strandat 4255.168 kb on - strandat 4255.168 kb on - strandat 4255.168 kb on - strandat 4255.168 kb on - strandat 4255.168 kb on - strandat 4255.168 kb on - strandat 4255.168 kb on - strandat 4255.168 kb on - strandat 4255.168 kb on - strandat 4255.168 kb on - strandat 4255.168 kb on - strandat 4255.171 kb on + strandat 4255.398 kb on + strand, within PFLU_RS18820at 4255.398 kb on + strand, within PFLU_RS18820at 4255.399 kb on - strand, within PFLU_RS18820at 4255.399 kb on - strand, within PFLU_RS18820at 4255.399 kb on - strand, within PFLU_RS18820at 4255.399 kb on - strand, within PFLU_RS18820at 4255.476 kb on + strandat 4255.476 kb on + strandat 4255.546 kb on + strandat 4255.547 kb on - strandat 4255.547 kb on - strandat 4255.547 kb on - strandat 4255.580 kb on + strandat 4255.581 kb on - strandat 4255.610 kb on + strand, within PFLU_RS18825at 4255.610 kb on + strand, within PFLU_RS18825at 4255.610 kb on + strand, within PFLU_RS18825at 4255.611 kb on - strand, within PFLU_RS18825at 4255.611 kb on - strand, within PFLU_RS18825at 4255.611 kb on - strand, within PFLU_RS18825at 4255.611 kb on - strand, within PFLU_RS18825at 4255.611 kb on - strand, within PFLU_RS18825at 4255.611 kb on - strand, within PFLU_RS18825at 4255.901 kb on - strand, within PFLU_RS18825at 4255.901 kb on - strand, within PFLU_RS18825at 4255.901 kb on - strand, within PFLU_RS18825at 4255.901 kb on - strand, within PFLU_RS18825at 4256.037 kb on + strand, within PFLU_RS18825at 4256.174 kb on + strand, within PFLU_RS18825at 4256.209 kb on + strand, within PFLU_RS18825at 4256.209 kb on + strand, within PFLU_RS18825at 4256.209 kb on + strand, within PFLU_RS18825at 4256.210 kb on - strand, within PFLU_RS18825at 4256.210 kb on - strand, within PFLU_RS18825at 4256.210 kb on - strand, within PFLU_RS18825at 4256.210 kb on - strand, within PFLU_RS18825at 4256.230 kb on + strand, within PFLU_RS18825at 4256.231 kb on - strand, within PFLU_RS18825at 4256.231 kb on - strand, within PFLU_RS18825at 4256.231 kb on - strand, within PFLU_RS18825at 4256.341 kb on + strand, within PFLU_RS18825at 4256.341 kb on + strand, within PFLU_RS18825at 4256.342 kb on - strand, within PFLU_RS18825at 4256.342 kb on - strand, within PFLU_RS18825at 4256.342 kb on - strand, within PFLU_RS18825at 4256.342 kb on - strand, within PFLU_RS18825at 4256.470 kb on + strand, within PFLU_RS18825at 4256.470 kb on + strand, within PFLU_RS18825at 4256.470 kb on + strand, within PFLU_RS18825at 4256.470 kb on + strand, within PFLU_RS18825at 4256.470 kb on + strand, within PFLU_RS18825at 4256.470 kb on + strand, within PFLU_RS18825at 4256.471 kb on - strand, within PFLU_RS18825at 4256.471 kb on - strand, within PFLU_RS18825at 4256.471 kb on - strand, within PFLU_RS18825at 4256.471 kb on - strand, within PFLU_RS18825at 4256.471 kb on - strand, within PFLU_RS18825at 4256.471 kb on - strand, within PFLU_RS18825at 4256.471 kb on - strand, within PFLU_RS18825at 4256.471 kb on - strand, within PFLU_RS18825at 4256.471 kb on - strand, within PFLU_RS18825

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs
remove
4,254,232 + PFLU_RS18815 0.36 -1.6
4,254,232 + PFLU_RS18815 0.36 +0.6
4,254,232 + PFLU_RS18815 0.36 +0.1
4,254,232 + PFLU_RS18815 0.36 +0.1
4,254,233 - PFLU_RS18815 0.36 +2.7
4,254,233 - PFLU_RS18815 0.36 -1.3
4,254,241 + PFLU_RS18815 0.37 -2.9
4,254,241 + PFLU_RS18815 0.37 +1.4
4,254,242 - PFLU_RS18815 0.37 -1.3
4,254,242 - PFLU_RS18815 0.37 -3.3
4,254,242 - PFLU_RS18815 0.37 +0.1
4,254,250 + PFLU_RS18815 0.38 -1.1
4,254,250 + PFLU_RS18815 0.38 -1.7
4,254,251 - PFLU_RS18815 0.38 -0.0
4,254,251 - PFLU_RS18815 0.38 +0.4
4,254,251 - PFLU_RS18815 0.38 +2.2
4,254,251 - PFLU_RS18815 0.38 -0.4
4,254,414 + PFLU_RS18815 0.49 +0.9
4,254,414 + PFLU_RS18815 0.49 -0.9
4,254,415 - PFLU_RS18815 0.49 -0.1
4,254,415 - PFLU_RS18815 0.49 -0.4
4,254,473 - PFLU_RS18815 0.53 +0.9
4,254,473 - PFLU_RS18815 0.53 -2.2
4,254,473 - PFLU_RS18815 0.53 +1.6
4,254,640 + PFLU_RS18815 0.65 -2.0
4,254,641 - PFLU_RS18815 0.65 -0.7
4,254,641 - PFLU_RS18815 0.65 +2.6
4,254,655 + PFLU_RS18815 0.66 +0.9
4,254,655 + PFLU_RS18815 0.66 +0.9
4,254,655 + PFLU_RS18815 0.66 -1.1
4,254,655 + PFLU_RS18815 0.66 -2.1
4,254,656 - PFLU_RS18815 0.66 +0.1
4,254,656 - PFLU_RS18815 0.66 +0.6
4,254,667 + PFLU_RS18815 0.67 -0.7
4,254,733 + PFLU_RS18815 0.71 -0.5
4,254,734 - PFLU_RS18815 0.71 +0.3
4,254,734 - PFLU_RS18815 0.71 +1.0
4,254,734 - PFLU_RS18815 0.71 -1.3
4,254,734 - PFLU_RS18815 0.71 +1.6
4,254,949 + PFLU_RS18815 0.86 -1.1
4,254,950 - PFLU_RS18815 0.86 -0.3
4,254,950 - PFLU_RS18815 0.86 -0.9
4,254,950 - PFLU_RS18815 0.86 -1.3
4,254,950 - PFLU_RS18815 0.86 +0.6
4,254,950 - PFLU_RS18815 0.86 -1.5
4,254,958 + PFLU_RS18815 0.87 -0.9
4,254,958 + PFLU_RS18815 0.87 -1.6
4,254,958 + PFLU_RS18815 0.87 -1.0
4,254,958 + PFLU_RS18815 0.87 -0.2
4,254,958 + PFLU_RS18815 0.87 +0.3
4,254,958 + PFLU_RS18815 0.87 +0.5
4,254,958 + PFLU_RS18815 0.87 +0.9
4,254,958 + PFLU_RS18815 0.87 +1.4
4,254,958 + PFLU_RS18815 0.87 -2.2
4,254,958 + PFLU_RS18815 0.87 -1.7
4,254,958 + PFLU_RS18815 0.87 +2.3
4,254,958 + PFLU_RS18815 0.87 +0.6
4,254,958 + PFLU_RS18815 0.87 -0.8
4,254,959 - PFLU_RS18815 0.87 +0.3
4,254,959 - PFLU_RS18815 0.87 +0.9
4,254,959 - PFLU_RS18815 0.87 -1.0
4,254,959 - PFLU_RS18815 0.87 +0.3
4,254,959 - PFLU_RS18815 0.87 -0.7
4,254,959 - PFLU_RS18815 0.87 +0.8
4,254,959 - PFLU_RS18815 0.87 -0.7
4,254,959 - PFLU_RS18815 0.87 -0.9
4,254,959 - PFLU_RS18815 0.87 +0.7
4,254,959 - PFLU_RS18815 0.87 -0.8
4,254,959 - PFLU_RS18815 0.87 +1.4
4,255,033 + +1.7
4,255,033 + +1.1
4,255,048 + -3.5
4,255,048 + -1.3
4,255,048 + +0.7
4,255,049 - -0.6
4,255,049 - -1.1
4,255,049 - +0.0
4,255,049 - +1.4
4,255,049 - +0.2
4,255,049 - -1.0
4,255,167 + +1.4
4,255,167 + +1.6
4,255,167 + -3.5
4,255,167 + -3.0
4,255,167 + -2.3
4,255,167 + -0.5
4,255,167 + +0.7
4,255,167 + +1.1
4,255,167 + +0.5
4,255,167 + +1.1
4,255,167 + -0.9
4,255,167 + -0.8
4,255,167 + +0.5
4,255,167 + +0.7
4,255,167 + +0.3
4,255,167 + +0.5
4,255,168 - +0.6
4,255,168 - +1.0
4,255,168 - +0.5
4,255,168 - -0.9
4,255,168 - -2.9
4,255,168 - -0.1
4,255,168 - -2.0
4,255,168 - -0.3
4,255,168 - +0.9
4,255,168 - -1.3
4,255,168 - +2.4
4,255,168 - +1.0
4,255,171 + +1.3
4,255,398 + PFLU_RS18820 0.77 +0.9
4,255,398 + PFLU_RS18820 0.77 -3.5
4,255,399 - PFLU_RS18820 0.78 -0.9
4,255,399 - PFLU_RS18820 0.78 -2.8
4,255,399 - PFLU_RS18820 0.78 -2.9
4,255,399 - PFLU_RS18820 0.78 -0.8
4,255,476 + -1.5
4,255,476 + +0.7
4,255,546 + -1.8
4,255,547 - -0.9
4,255,547 - +0.4
4,255,547 - -1.6
4,255,580 + +1.2
4,255,581 - +0.2
4,255,610 + PFLU_RS18825 0.10 +0.5
4,255,610 + PFLU_RS18825 0.10 +1.5
4,255,610 + PFLU_RS18825 0.10 +0.0
4,255,611 - PFLU_RS18825 0.11 -3.0
4,255,611 - PFLU_RS18825 0.11 -0.3
4,255,611 - PFLU_RS18825 0.11 -2.5
4,255,611 - PFLU_RS18825 0.11 +0.7
4,255,611 - PFLU_RS18825 0.11 -0.0
4,255,611 - PFLU_RS18825 0.11 +0.0
4,255,901 - PFLU_RS18825 0.35 -2.1
4,255,901 - PFLU_RS18825 0.35 -2.9
4,255,901 - PFLU_RS18825 0.35 +0.1
4,255,901 - PFLU_RS18825 0.35 +1.7
4,256,037 + PFLU_RS18825 0.46 +2.8
4,256,174 + PFLU_RS18825 0.58 +2.7
4,256,209 + PFLU_RS18825 0.60 -0.6
4,256,209 + PFLU_RS18825 0.60 -0.1
4,256,209 + PFLU_RS18825 0.60 -4.0
4,256,210 - PFLU_RS18825 0.61 -1.1
4,256,210 - PFLU_RS18825 0.61 -3.1
4,256,210 - PFLU_RS18825 0.61 +1.1
4,256,210 - PFLU_RS18825 0.61 -0.8
4,256,230 + PFLU_RS18825 0.62 +0.9
4,256,231 - PFLU_RS18825 0.62 +1.0
4,256,231 - PFLU_RS18825 0.62 -3.8
4,256,231 - PFLU_RS18825 0.62 +1.6
4,256,341 + PFLU_RS18825 0.72 +1.7
4,256,341 + PFLU_RS18825 0.72 +1.2
4,256,342 - PFLU_RS18825 0.72 -0.2
4,256,342 - PFLU_RS18825 0.72 -3.0
4,256,342 - PFLU_RS18825 0.72 -2.1
4,256,342 - PFLU_RS18825 0.72 -2.7
4,256,470 + PFLU_RS18825 0.82 +0.5
4,256,470 + PFLU_RS18825 0.82 -1.8
4,256,470 + PFLU_RS18825 0.82 -3.1
4,256,470 + PFLU_RS18825 0.82 -0.7
4,256,470 + PFLU_RS18825 0.82 -2.5
4,256,470 + PFLU_RS18825 0.82 +1.0
4,256,471 - PFLU_RS18825 0.82 -1.7
4,256,471 - PFLU_RS18825 0.82 +0.0
4,256,471 - PFLU_RS18825 0.82 -0.8
4,256,471 - PFLU_RS18825 0.82 -2.3
4,256,471 - PFLU_RS18825 0.82 -1.4
4,256,471 - PFLU_RS18825 0.82 +1.3
4,256,471 - PFLU_RS18825 0.82 +0.9
4,256,471 - PFLU_RS18825 0.82 +2.0
4,256,471 - PFLU_RS18825 0.82 +0.3

Or see this region's nucleotide sequence