Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS18345 and PFLU_RS18350 are separated by 40 nucleotides PFLU_RS18350 and PFLU_RS18355 are separated by 293 nucleotides PFLU_RS18355 and PFLU_RS18360 are separated by 152 nucleotides PFLU_RS18360 and PFLU_RS18365 are separated by 76 nucleotides
PFLU_RS18345: PFLU_RS18345 - hypothetical protein, at 4,162,523 to 4,163,146
_RS18345
PFLU_RS18350: PFLU_RS18350 - GIY-YIG nuclease family protein, at 4,163,187 to 4,163,321
_RS18350
PFLU_RS18355: PFLU_RS18355 - tRNA-Ser, at 4,163,615 to 4,163,705
_RS18355
PFLU_RS18360: PFLU_RS18360 - Bax inhibitor-1/YccA family protein, at 4,163,858 to 4,164,529
_RS18360
PFLU_RS18365: PFLU_RS18365 - UDP-N-acetylmuramate dehydrogenase, at 4,164,606 to 4,165,625
_RS18365
Position (kb) 4163
4164
4165 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4162.864 kb on + strand, within PFLU_RS18345 at 4162.864 kb on + strand, within PFLU_RS18345 at 4162.866 kb on + strand, within PFLU_RS18345 at 4162.913 kb on + strand, within PFLU_RS18345 at 4162.913 kb on + strand, within PFLU_RS18345 at 4162.950 kb on - strand, within PFLU_RS18345 at 4162.972 kb on + strand, within PFLU_RS18345 at 4162.972 kb on + strand, within PFLU_RS18345 at 4162.972 kb on + strand, within PFLU_RS18345 at 4163.053 kb on + strand, within PFLU_RS18345 at 4163.054 kb on - strand, within PFLU_RS18345 at 4163.103 kb on + strand at 4163.103 kb on + strand at 4163.104 kb on - strand at 4163.116 kb on - strand at 4163.211 kb on - strand, within PFLU_RS18350 at 4163.287 kb on + strand, within PFLU_RS18350 at 4163.287 kb on + strand, within PFLU_RS18350 at 4163.287 kb on + strand, within PFLU_RS18350 at 4163.307 kb on + strand, within PFLU_RS18350 at 4163.499 kb on + strand at 4163.500 kb on - strand at 4163.500 kb on - strand at 4163.526 kb on + strand at 4163.526 kb on + strand at 4163.526 kb on + strand at 4163.526 kb on + strand at 4163.526 kb on + strand at 4163.526 kb on + strand at 4163.527 kb on - strand at 4163.527 kb on - strand at 4163.527 kb on - strand at 4163.527 kb on - strand at 4163.527 kb on - strand at 4163.527 kb on - strand at 4163.527 kb on - strand at 4163.543 kb on + strand at 4163.543 kb on + strand at 4163.543 kb on + strand at 4163.544 kb on - strand at 4163.544 kb on - strand at 4163.544 kb on - strand at 4163.544 kb on - strand at 4163.544 kb on - strand at 4163.544 kb on - strand at 4163.544 kb on - strand at 4163.547 kb on + strand at 4163.547 kb on + strand at 4163.548 kb on - strand at 4163.608 kb on - strand at 4163.608 kb on - strand at 4163.725 kb on - strand at 4163.725 kb on - strand at 4163.725 kb on - strand at 4163.725 kb on - strand at 4163.725 kb on - strand at 4163.725 kb on - strand at 4163.725 kb on - strand at 4163.728 kb on - strand at 4163.728 kb on - strand at 4163.799 kb on + strand at 4163.799 kb on + strand at 4163.813 kb on + strand at 4163.874 kb on - strand at 4163.874 kb on - strand at 4163.936 kb on + strand, within PFLU_RS18360 at 4163.936 kb on + strand, within PFLU_RS18360 at 4163.936 kb on + strand, within PFLU_RS18360 at 4163.936 kb on + strand, within PFLU_RS18360 at 4163.936 kb on + strand, within PFLU_RS18360 at 4163.936 kb on + strand, within PFLU_RS18360 at 4163.936 kb on + strand, within PFLU_RS18360 at 4163.937 kb on - strand, within PFLU_RS18360 at 4163.937 kb on - strand, within PFLU_RS18360 at 4163.937 kb on - strand, within PFLU_RS18360 at 4163.937 kb on - strand, within PFLU_RS18360 at 4163.937 kb on - strand, within PFLU_RS18360 at 4163.937 kb on - strand, within PFLU_RS18360 at 4163.937 kb on - strand, within PFLU_RS18360 at 4163.937 kb on - strand, within PFLU_RS18360 at 4163.937 kb on - strand, within PFLU_RS18360 at 4164.017 kb on - strand, within PFLU_RS18360 at 4164.017 kb on - strand, within PFLU_RS18360 at 4164.041 kb on + strand, within PFLU_RS18360 at 4164.041 kb on + strand, within PFLU_RS18360 at 4164.041 kb on + strand, within PFLU_RS18360 at 4164.041 kb on + strand, within PFLU_RS18360 at 4164.041 kb on + strand, within PFLU_RS18360 at 4164.041 kb on + strand, within PFLU_RS18360 at 4164.041 kb on + strand, within PFLU_RS18360 at 4164.041 kb on + strand, within PFLU_RS18360 at 4164.041 kb on + strand, within PFLU_RS18360 at 4164.041 kb on + strand, within PFLU_RS18360 at 4164.042 kb on - strand, within PFLU_RS18360 at 4164.042 kb on - strand, within PFLU_RS18360 at 4164.042 kb on - strand, within PFLU_RS18360 at 4164.042 kb on - strand, within PFLU_RS18360 at 4164.042 kb on - strand, within PFLU_RS18360 at 4164.042 kb on - strand, within PFLU_RS18360 at 4164.042 kb on - strand, within PFLU_RS18360 at 4164.042 kb on - strand, within PFLU_RS18360 at 4164.042 kb on - strand, within PFLU_RS18360 at 4164.042 kb on - strand, within PFLU_RS18360 at 4164.042 kb on - strand, within PFLU_RS18360 at 4164.042 kb on - strand, within PFLU_RS18360 at 4164.042 kb on - strand, within PFLU_RS18360 at 4164.153 kb on - strand, within PFLU_RS18360 at 4164.233 kb on + strand, within PFLU_RS18360 at 4164.233 kb on + strand, within PFLU_RS18360 at 4164.233 kb on + strand, within PFLU_RS18360 at 4164.234 kb on - strand, within PFLU_RS18360 at 4164.234 kb on - strand, within PFLU_RS18360 at 4164.433 kb on + strand, within PFLU_RS18360 at 4164.433 kb on + strand, within PFLU_RS18360 at 4164.433 kb on + strand, within PFLU_RS18360 at 4164.433 kb on + strand, within PFLU_RS18360 at 4164.433 kb on + strand, within PFLU_RS18360 at 4164.433 kb on + strand, within PFLU_RS18360 at 4164.433 kb on + strand, within PFLU_RS18360 at 4164.434 kb on - strand, within PFLU_RS18360 at 4164.434 kb on - strand, within PFLU_RS18360 at 4164.434 kb on - strand, within PFLU_RS18360 at 4164.434 kb on - strand, within PFLU_RS18360 at 4164.434 kb on - strand, within PFLU_RS18360 at 4164.434 kb on - strand, within PFLU_RS18360 at 4164.437 kb on + strand, within PFLU_RS18360 at 4164.437 kb on + strand, within PFLU_RS18360 at 4164.437 kb on + strand, within PFLU_RS18360 at 4164.437 kb on + strand, within PFLU_RS18360 at 4164.437 kb on + strand, within PFLU_RS18360 at 4164.437 kb on + strand, within PFLU_RS18360 at 4164.437 kb on + strand, within PFLU_RS18360 at 4164.437 kb on + strand, within PFLU_RS18360 at 4164.437 kb on + strand, within PFLU_RS18360 at 4164.437 kb on + strand, within PFLU_RS18360 at 4164.437 kb on + strand, within PFLU_RS18360 at 4164.438 kb on - strand, within PFLU_RS18360 at 4164.438 kb on - strand, within PFLU_RS18360 at 4164.438 kb on - strand, within PFLU_RS18360 at 4164.438 kb on - strand, within PFLU_RS18360 at 4164.438 kb on - strand, within PFLU_RS18360 at 4164.438 kb on - strand, within PFLU_RS18360 at 4164.438 kb on - strand, within PFLU_RS18360 at 4164.438 kb on - strand, within PFLU_RS18360 at 4164.438 kb on - strand, within PFLU_RS18360 at 4164.438 kb on - strand, within PFLU_RS18360 at 4164.438 kb on - strand, within PFLU_RS18360 at 4164.438 kb on - strand, within PFLU_RS18360 at 4164.461 kb on + strand, within PFLU_RS18360 at 4164.461 kb on + strand, within PFLU_RS18360 at 4164.461 kb on + strand, within PFLU_RS18360 at 4164.461 kb on + strand, within PFLU_RS18360 at 4164.461 kb on + strand, within PFLU_RS18360 at 4164.461 kb on + strand, within PFLU_RS18360 at 4164.461 kb on + strand, within PFLU_RS18360 at 4164.461 kb on + strand, within PFLU_RS18360 at 4164.461 kb on + strand, within PFLU_RS18360 at 4164.461 kb on + strand, within PFLU_RS18360 at 4164.461 kb on + strand, within PFLU_RS18360 at 4164.461 kb on + strand, within PFLU_RS18360 at 4164.462 kb on - strand at 4164.462 kb on - strand at 4164.462 kb on - strand at 4164.462 kb on - strand at 4164.473 kb on + strand at 4164.473 kb on + strand at 4164.473 kb on + strand at 4164.473 kb on + strand at 4164.473 kb on + strand at 4164.473 kb on + strand at 4164.474 kb on - strand at 4164.474 kb on - strand at 4164.474 kb on - strand at 4164.474 kb on - strand at 4164.566 kb on + strand at 4164.567 kb on - strand at 4164.586 kb on + strand at 4164.586 kb on + strand at 4164.586 kb on + strand at 4164.586 kb on + strand at 4164.586 kb on + strand at 4164.586 kb on + strand at 4164.586 kb on + strand at 4164.586 kb on + strand at 4164.586 kb on + strand at 4164.587 kb on - strand at 4164.587 kb on - strand at 4164.587 kb on - strand at 4164.587 kb on - strand at 4164.587 kb on - strand at 4164.587 kb on - strand at 4164.587 kb on - strand at 4164.587 kb on - strand at 4164.587 kb on - strand at 4164.587 kb on - strand at 4164.587 kb on - strand at 4164.587 kb on - strand at 4164.587 kb on - strand at 4164.587 kb on - strand at 4164.587 kb on - strand at 4164.591 kb on - strand at 4164.610 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs remove 4,162,864 + PFLU_RS18345 0.55 -0.6 4,162,864 + PFLU_RS18345 0.55 +0.2 4,162,866 + PFLU_RS18345 0.55 -3.0 4,162,913 + PFLU_RS18345 0.62 +0.9 4,162,913 + PFLU_RS18345 0.62 -0.2 4,162,950 - PFLU_RS18345 0.68 -0.5 4,162,972 + PFLU_RS18345 0.72 -1.1 4,162,972 + PFLU_RS18345 0.72 -2.8 4,162,972 + PFLU_RS18345 0.72 +0.1 4,163,053 + PFLU_RS18345 0.85 -0.8 4,163,054 - PFLU_RS18345 0.85 +1.7 4,163,103 + +0.5 4,163,103 + -2.5 4,163,104 - -1.1 4,163,116 - -1.5 4,163,211 - PFLU_RS18350 0.18 -0.9 4,163,287 + PFLU_RS18350 0.74 -2.8 4,163,287 + PFLU_RS18350 0.74 -2.2 4,163,287 + PFLU_RS18350 0.74 +0.5 4,163,307 + PFLU_RS18350 0.89 -0.7 4,163,499 + +0.9 4,163,500 - -2.3 4,163,500 - -0.9 4,163,526 + -0.1 4,163,526 + -0.1 4,163,526 + -1.6 4,163,526 + -3.3 4,163,526 + +2.4 4,163,526 + -1.1 4,163,527 - +2.3 4,163,527 - +1.9 4,163,527 - -3.3 4,163,527 - +1.5 4,163,527 - -0.6 4,163,527 - +1.7 4,163,527 - +1.1 4,163,543 + -2.8 4,163,543 + -1.0 4,163,543 + +0.9 4,163,544 - +2.4 4,163,544 - +0.3 4,163,544 - -0.8 4,163,544 - +1.9 4,163,544 - -1.6 4,163,544 - -1.5 4,163,544 - +0.3 4,163,547 + +0.7 4,163,547 + +1.0 4,163,548 - +1.6 4,163,608 - +0.3 4,163,608 - -1.0 4,163,725 - -1.6 4,163,725 - +0.9 4,163,725 - +0.5 4,163,725 - -1.5 4,163,725 - -1.5 4,163,725 - -3.8 4,163,725 - +2.1 4,163,728 - -0.5 4,163,728 - +0.3 4,163,799 + -0.8 4,163,799 + +1.1 4,163,813 + +1.9 4,163,874 - -1.6 4,163,874 - -1.8 4,163,936 + PFLU_RS18360 0.12 -2.1 4,163,936 + PFLU_RS18360 0.12 +0.7 4,163,936 + PFLU_RS18360 0.12 -2.9 4,163,936 + PFLU_RS18360 0.12 +0.7 4,163,936 + PFLU_RS18360 0.12 -1.1 4,163,936 + PFLU_RS18360 0.12 -1.1 4,163,936 + PFLU_RS18360 0.12 +1.0 4,163,937 - PFLU_RS18360 0.12 +0.9 4,163,937 - PFLU_RS18360 0.12 -0.9 4,163,937 - PFLU_RS18360 0.12 +1.6 4,163,937 - PFLU_RS18360 0.12 -1.6 4,163,937 - PFLU_RS18360 0.12 -2.3 4,163,937 - PFLU_RS18360 0.12 -1.6 4,163,937 - PFLU_RS18360 0.12 +0.6 4,163,937 - PFLU_RS18360 0.12 +1.2 4,163,937 - PFLU_RS18360 0.12 -1.3 4,164,017 - PFLU_RS18360 0.24 -1.3 4,164,017 - PFLU_RS18360 0.24 -2.3 4,164,041 + PFLU_RS18360 0.27 -1.9 4,164,041 + PFLU_RS18360 0.27 -1.3 4,164,041 + PFLU_RS18360 0.27 +1.2 4,164,041 + PFLU_RS18360 0.27 +0.5 4,164,041 + PFLU_RS18360 0.27 -2.0 4,164,041 + PFLU_RS18360 0.27 +0.5 4,164,041 + PFLU_RS18360 0.27 -1.3 4,164,041 + PFLU_RS18360 0.27 -2.6 4,164,041 + PFLU_RS18360 0.27 -1.9 4,164,041 + PFLU_RS18360 0.27 -2.9 4,164,042 - PFLU_RS18360 0.27 -2.0 4,164,042 - PFLU_RS18360 0.27 +2.2 4,164,042 - PFLU_RS18360 0.27 -2.5 4,164,042 - PFLU_RS18360 0.27 -1.3 4,164,042 - PFLU_RS18360 0.27 -0.3 4,164,042 - PFLU_RS18360 0.27 -2.3 4,164,042 - PFLU_RS18360 0.27 -0.5 4,164,042 - PFLU_RS18360 0.27 -1.8 4,164,042 - PFLU_RS18360 0.27 -1.1 4,164,042 - PFLU_RS18360 0.27 -1.7 4,164,042 - PFLU_RS18360 0.27 -1.9 4,164,042 - PFLU_RS18360 0.27 -2.2 4,164,042 - PFLU_RS18360 0.27 +1.3 4,164,153 - PFLU_RS18360 0.44 -0.1 4,164,233 + PFLU_RS18360 0.56 -3.5 4,164,233 + PFLU_RS18360 0.56 -0.5 4,164,233 + PFLU_RS18360 0.56 -2.1 4,164,234 - PFLU_RS18360 0.56 -1.7 4,164,234 - PFLU_RS18360 0.56 +1.1 4,164,433 + PFLU_RS18360 0.86 -0.1 4,164,433 + PFLU_RS18360 0.86 +2.2 4,164,433 + PFLU_RS18360 0.86 +2.1 4,164,433 + PFLU_RS18360 0.86 -1.9 4,164,433 + PFLU_RS18360 0.86 -1.9 4,164,433 + PFLU_RS18360 0.86 -2.0 4,164,433 + PFLU_RS18360 0.86 -2.4 4,164,434 - PFLU_RS18360 0.86 +0.9 4,164,434 - PFLU_RS18360 0.86 -0.1 4,164,434 - PFLU_RS18360 0.86 -0.5 4,164,434 - PFLU_RS18360 0.86 +2.4 4,164,434 - PFLU_RS18360 0.86 -0.7 4,164,434 - PFLU_RS18360 0.86 +0.3 4,164,437 + PFLU_RS18360 0.86 -1.3 4,164,437 + PFLU_RS18360 0.86 -0.3 4,164,437 + PFLU_RS18360 0.86 -1.1 4,164,437 + PFLU_RS18360 0.86 -1.3 4,164,437 + PFLU_RS18360 0.86 -1.1 4,164,437 + PFLU_RS18360 0.86 -2.4 4,164,437 + PFLU_RS18360 0.86 +0.3 4,164,437 + PFLU_RS18360 0.86 -2.3 4,164,437 + PFLU_RS18360 0.86 -0.1 4,164,437 + PFLU_RS18360 0.86 -0.5 4,164,437 + PFLU_RS18360 0.86 -1.7 4,164,438 - PFLU_RS18360 0.86 -1.7 4,164,438 - PFLU_RS18360 0.86 -1.9 4,164,438 - PFLU_RS18360 0.86 +0.9 4,164,438 - PFLU_RS18360 0.86 -1.7 4,164,438 - PFLU_RS18360 0.86 +0.6 4,164,438 - PFLU_RS18360 0.86 +1.9 4,164,438 - PFLU_RS18360 0.86 -0.7 4,164,438 - PFLU_RS18360 0.86 -0.7 4,164,438 - PFLU_RS18360 0.86 -0.1 4,164,438 - PFLU_RS18360 0.86 -1.1 4,164,438 - PFLU_RS18360 0.86 -1.3 4,164,438 - PFLU_RS18360 0.86 -2.1 4,164,461 + PFLU_RS18360 0.90 +0.2 4,164,461 + PFLU_RS18360 0.90 -2.5 4,164,461 + PFLU_RS18360 0.90 +0.7 4,164,461 + PFLU_RS18360 0.90 -0.9 4,164,461 + PFLU_RS18360 0.90 +0.2 4,164,461 + PFLU_RS18360 0.90 -2.9 4,164,461 + PFLU_RS18360 0.90 -0.9 4,164,461 + PFLU_RS18360 0.90 -3.1 4,164,461 + PFLU_RS18360 0.90 -0.9 4,164,461 + PFLU_RS18360 0.90 -0.8 4,164,461 + PFLU_RS18360 0.90 -0.5 4,164,461 + PFLU_RS18360 0.90 -0.1 4,164,462 - -0.5 4,164,462 - -0.1 4,164,462 - +1.5 4,164,462 - -0.5 4,164,473 + -0.4 4,164,473 + -1.4 4,164,473 + -0.4 4,164,473 + -2.5 4,164,473 + +0.0 4,164,473 + -2.5 4,164,474 - +0.3 4,164,474 - +0.3 4,164,474 - -2.1 4,164,474 - -1.3 4,164,566 + -0.5 4,164,567 - -0.7 4,164,586 + +1.0 4,164,586 + -2.6 4,164,586 + -1.2 4,164,586 + -2.0 4,164,586 + +0.3 4,164,586 + +0.1 4,164,586 + +0.3 4,164,586 + -1.7 4,164,586 + +0.5 4,164,587 - +0.1 4,164,587 - +0.5 4,164,587 - -2.9 4,164,587 - +1.2 4,164,587 - -1.7 4,164,587 - +0.0 4,164,587 - -1.7 4,164,587 - -0.5 4,164,587 - -1.0 4,164,587 - -0.8 4,164,587 - +0.7 4,164,587 - -0.8 4,164,587 - +1.5 4,164,587 - +0.4 4,164,587 - +1.6 4,164,591 - +0.3 4,164,610 + +0.6
Or see this region's nucleotide sequence