Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS15830

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs
3,598,140	+		PFLU_RS15825	0.76	+1.6
3,598,487	+				+1.7
3,598,488	-				-2.1
3,598,535	+				+0.7
3,598,536	-				-1.5
3,598,536	-				-1.5
3,598,553	+				-2.0
3,598,554	-				-1.2
3,598,554	-				-2.0
3,598,581	+				-3.0
3,598,598	-				-0.4
3,598,624	-				-0.9
3,598,630	-				+0.0
3,598,673	+				-0.9
3,598,673	+				-1.9
3,598,674	-				+1.9
3,598,674	-				-2.2
3,598,678	+				-1.0
3,598,678	+				-2.8
3,598,678	+				-0.9
3,598,678	+				-0.1
3,598,678	+				-0.4
3,598,679	-				+2.4
3,598,679	-				-0.4
3,598,679	-				-1.9
3,598,679	-				-1.8
3,598,679	-				-0.9
3,598,679	-				-0.7
3,598,679	-				-2.5
3,598,679	-				+1.8
3,598,679	-				-0.7
3,598,679	-				-2.5
3,598,679	-				+0.7
3,598,697	+				-0.4
3,598,698	-				-0.8
3,598,698	-				-2.0
3,598,701	+				+1.9
3,598,731	+				-0.9
3,598,731	+				-2.3
3,598,732	-				+1.8
3,598,732	-				-0.9
3,598,733	+				+0.3
3,598,733	+				+0.8
3,598,733	+				-2.2
3,598,733	+				-2.4
3,598,733	+				+0.8
3,598,734	-				+0.3
3,598,734	-				-0.4
3,598,734	-				-1.2
3,598,734	-				+0.3
3,598,734	-				-2.7
3,598,734	-				-1.8
3,598,734	-				-0.9
3,598,734	-				-0.7
3,598,737	+				-3.0
3,598,737	+				-0.1
3,598,737	+				+1.2
3,598,737	+				-1.9
3,598,737	+				+0.6
3,598,737	+				+0.9
3,598,737	+				+0.4
3,598,737	+				+2.3
3,598,737	+				+0.7
3,598,738	-				-2.7
3,598,738	-				-1.0
3,598,738	-				-1.8
3,598,770	+				+0.3
3,598,770	+				-2.6
3,598,771	-				+3.2
3,598,771	-				-1.5
3,598,771	-				-1.0
3,598,827	+				-0.9
3,598,834	+				+3.2
3,598,834	+				+0.9
3,598,834	+				-1.2
3,598,834	+				+2.7
3,598,835	-				+1.7
3,598,843	+				+0.7
3,598,843	+				-0.2
3,598,843	+				-1.1
3,598,843	+				-1.7
3,598,843	+				-3.7
3,598,844	-				+1.3
3,598,844	-				-2.1
3,598,844	-				-1.1
3,598,844	-				-1.5
3,598,844	-				+1.2
3,598,844	-				-2.4
3,598,844	-				+0.8
3,598,965	+				-0.4
3,598,966	-				-1.1
3,598,972	+				-0.9
3,599,041	-				-2.0
3,599,215	-		PFLU_RS15830	0.35	-1.5
3,599,231	+		PFLU_RS15830	0.40	-2.0
3,599,231	+		PFLU_RS15830	0.40	+0.4
3,599,232	-		PFLU_RS15830	0.41	+0.5
3,599,232	-		PFLU_RS15830	0.41	-0.7
3,599,335	-		PFLU_RS15830	0.75	-2.3
3,599,508	-				-0.5
3,599,517	+				-1.6
3,599,517	+				-1.9
3,599,517	+				+0.5
3,599,517	+				-1.2
3,599,518	-				-0.1
3,599,518	-				-2.0
3,599,518	-				-0.7
3,599,518	-				-0.1
3,599,518	-				+0.8
3,599,542	+				+1.6
3,599,542	+				-2.5
3,599,543	-				-3.2
3,599,556	+		PFLU_RS15835	0.10	+1.4
3,599,556	+		PFLU_RS15835	0.10	-2.5
3,599,557	-		PFLU_RS15835	0.10	+1.1
3,599,576	+		PFLU_RS15835	0.11	+1.2
3,599,576	+		PFLU_RS15835	0.11	+0.4
3,599,576	+		PFLU_RS15835	0.11	+0.6
3,599,577	-		PFLU_RS15835	0.11	-2.8
3,599,577	-		PFLU_RS15835	0.11	+1.5
3,599,577	-		PFLU_RS15835	0.11	+0.2
3,599,577	-		PFLU_RS15835	0.11	+0.2
3,599,586	+		PFLU_RS15835	0.12	-2.3
3,599,587	-		PFLU_RS15835	0.12	-0.4
3,599,587	-		PFLU_RS15835	0.12	-0.5
3,599,616	+		PFLU_RS15835	0.14	-1.3
3,599,617	-		PFLU_RS15835	0.14	-0.9
3,599,617	-		PFLU_RS15835	0.14	-1.2
3,599,617	-		PFLU_RS15835	0.14	+1.0
3,599,617	-		PFLU_RS15835	0.14	+1.4
3,599,953	+		PFLU_RS15835	0.37	-0.2
3,599,954	-		PFLU_RS15835	0.37	+0.1
3,599,954	-		PFLU_RS15835	0.37	-2.4
3,599,998	+		PFLU_RS15835	0.40	+1.8
3,599,998	+		PFLU_RS15835	0.40	-1.1
3,600,080	+		PFLU_RS15835	0.45	-1.1
3,600,099	+		PFLU_RS15835	0.47	+0.7
3,600,099	+		PFLU_RS15835	0.47	-0.2
3,600,099	+		PFLU_RS15835	0.47	-2.2
3,600,100	-		PFLU_RS15835	0.47	-3.7
3,600,112	+		PFLU_RS15835	0.47	-2.7
3,600,112	+		PFLU_RS15835	0.47	+1.0
3,600,112	+		PFLU_RS15835	0.47	-3.3
3,600,113	-		PFLU_RS15835	0.48	+0.4
3,600,113	-		PFLU_RS15835	0.48	-1.6
3,600,113	-		PFLU_RS15835	0.48	+0.5
3,600,113	-		PFLU_RS15835	0.48	+1.5
3,600,219	+		PFLU_RS15835	0.55	+0.2
3,600,219	+		PFLU_RS15835	0.55	+0.9
3,600,219	+		PFLU_RS15835	0.55	-2.2
3,600,219	+		PFLU_RS15835	0.55	-1.9
3,600,219	+		PFLU_RS15835	0.55	+0.3
3,600,220	-		PFLU_RS15835	0.55	-0.4
3,600,220	-		PFLU_RS15835	0.55	-2.7
3,600,220	-		PFLU_RS15835	0.55	-1.8
3,600,220	-		PFLU_RS15835	0.55	+0.3
3,600,220	-		PFLU_RS15835	0.55	+0.2
3,600,220	-		PFLU_RS15835	0.55	+0.2
3,600,220	-		PFLU_RS15835	0.55	-1.9
3,600,223	+		PFLU_RS15835	0.55	+3.3
3,600,223	+		PFLU_RS15835	0.55	+0.2
3,600,223	+		PFLU_RS15835	0.55	-0.3
3,600,223	+		PFLU_RS15835	0.55	-2.5
3,600,223	+		PFLU_RS15835	0.55	-0.1
3,600,223	+		PFLU_RS15835	0.55	+1.8
3,600,223	+		PFLU_RS15835	0.55	+0.4
3,600,223	+		PFLU_RS15835	0.55	-0.7
3,600,224	-		PFLU_RS15835	0.55	+1.6
3,600,224	-		PFLU_RS15835	0.55	-2.0
3,600,224	-		PFLU_RS15835	0.55	+1.3
3,600,224	-		PFLU_RS15835	0.55	-0.9
3,600,224	-		PFLU_RS15835	0.55	-1.8
3,600,224	-		PFLU_RS15835	0.55	-3.5
3,600,224	-		PFLU_RS15835	0.55	+1.7
3,600,224	-		PFLU_RS15835	0.55	+0.3
3,600,224	-		PFLU_RS15835	0.55	-2.4
3,600,303	+		PFLU_RS15835	0.60	+1.3
3,600,304	-		PFLU_RS15835	0.60	+0.7
3,600,304	-		PFLU_RS15835	0.60	+0.8
3,600,309	-		PFLU_RS15835	0.61	-0.5
3,600,330	+		PFLU_RS15835	0.62	+0.3
3,600,330	+		PFLU_RS15835	0.62	-1.7
3,600,330	+		PFLU_RS15835	0.62	-0.7
3,600,331	-		PFLU_RS15835	0.62	+0.0
3,600,349	-		PFLU_RS15835	0.63	+1.4
3,600,349	-		PFLU_RS15835	0.63	+1.4
3,600,359	+		PFLU_RS15835	0.64	+0.8
3,600,359	+		PFLU_RS15835	0.64	-1.4
3,600,360	-		PFLU_RS15835	0.64	-2.2
3,600,360	-		PFLU_RS15835	0.64	+2.8
3,600,376	+		PFLU_RS15835	0.65	-2.5
3,600,376	+		PFLU_RS15835	0.65	+2.7
3,600,376	+		PFLU_RS15835	0.65	-0.7
3,600,376	+		PFLU_RS15835	0.65	+0.6
3,600,376	+		PFLU_RS15835	0.65	+1.6
3,600,377	-		PFLU_RS15835	0.65	+0.2
3,600,377	-		PFLU_RS15835	0.65	+1.2
3,600,377	-		PFLU_RS15835	0.65	-0.4
3,600,378	+		PFLU_RS15835	0.65	+0.7
3,600,378	+		PFLU_RS15835	0.65	-2.9
3,600,378	+		PFLU_RS15835	0.65	+1.2
3,600,378	+		PFLU_RS15835	0.65	-1.5
3,600,378	+		PFLU_RS15835	0.65	-0.1
3,600,379	-		PFLU_RS15835	0.65	-0.7
3,600,379	-		PFLU_RS15835	0.65	-1.8
3,600,379	-		PFLU_RS15835	0.65	+1.8
3,600,379	-		PFLU_RS15835	0.65	+2.3
3,600,379	-		PFLU_RS15835	0.65	+0.5
3,600,393	+		PFLU_RS15835	0.66	-2.9
3,600,393	+		PFLU_RS15835	0.66	-2.7
3,600,393	+		PFLU_RS15835	0.66	-1.1
3,600,393	+		PFLU_RS15835	0.66	+1.7
3,600,393	+		PFLU_RS15835	0.66	-0.1
3,600,394	-		PFLU_RS15835	0.66	-1.7
3,600,395	+		PFLU_RS15835	0.66	-0.9
3,600,395	+		PFLU_RS15835	0.66	-1.5
3,600,395	+		PFLU_RS15835	0.66	+0.0
3,600,395	+		PFLU_RS15835	0.66	-1.1
3,600,396	-		PFLU_RS15835	0.67	-0.1
3,600,396	-		PFLU_RS15835	0.67	+1.4
3,600,396	-		PFLU_RS15835	0.67	-0.6