Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS14555

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs
3,252,475	+				+1.6
3,252,475	+				+0.2
3,252,475	+				-0.1
3,252,476	-				+0.9
3,252,476	-				-0.6
3,252,476	-				+2.0
3,252,476	-				-0.9
3,252,495	-				-1.8
3,252,510	+				+1.5
3,252,510	+				+1.0
3,252,510	+				+1.2
3,252,511	-				+3.1
3,252,511	-				-0.0
3,252,511	-				-0.3
3,252,511	-				-0.4
3,252,520	+				+1.8
3,252,520	+				+2.1
3,252,520	+				+1.8
3,252,520	+				+1.0
3,252,520	+				-2.6
3,252,520	+				-1.7
3,252,520	+				+0.7
3,252,520	+				+1.1
3,252,520	+				+1.5
3,252,520	+				+2.2
3,252,520	+				+2.0
3,252,520	+				+1.6
3,252,520	+				-1.0
3,252,520	+				+1.0
3,252,520	+				-2.0
3,252,520	+				+2.7
3,252,521	-				-1.6
3,252,521	-				+0.6
3,252,521	-				+2.4
3,252,521	-				-0.2
3,252,521	-				-1.5
3,252,521	-				+3.0
3,252,521	-				+2.3
3,252,521	-				+0.9
3,252,521	-				+1.7
3,252,521	-				+0.6
3,252,521	-				+1.3
3,252,521	-				+1.7
3,252,521	-				+1.7
3,252,521	-				+1.2
3,252,694	+		PFLU_RS14550	0.21	+1.7
3,252,694	+		PFLU_RS14550	0.21	+2.6
3,252,694	+		PFLU_RS14550	0.21	+3.0
3,252,728	+		PFLU_RS14550	0.25	+2.8
3,252,728	+		PFLU_RS14550	0.25	+2.1
3,252,728	+		PFLU_RS14550	0.25	+2.4
3,252,728	+		PFLU_RS14550	0.25	+2.1
3,252,728	+		PFLU_RS14550	0.25	+1.1
3,252,728	+		PFLU_RS14550	0.25	+3.1
3,252,770	+		PFLU_RS14550	0.30	+2.2
3,252,771	-		PFLU_RS14550	0.30	+0.7
3,252,815	+		PFLU_RS14550	0.35	+2.0
3,252,816	-		PFLU_RS14550	0.35	+1.6
3,252,816	-		PFLU_RS14550	0.35	+1.8
3,252,816	-		PFLU_RS14550	0.35	+0.6
3,252,816	-		PFLU_RS14550	0.35	-0.8
3,252,974	+		PFLU_RS14550	0.54	+3.3
3,252,974	+		PFLU_RS14550	0.54	+3.0
3,252,975	-		PFLU_RS14550	0.54	+2.4
3,252,975	-		PFLU_RS14550	0.54	+1.2
3,253,028	+		PFLU_RS14550	0.60	+1.4
3,253,028	+		PFLU_RS14550	0.60	+0.5
3,253,029	-		PFLU_RS14550	0.60	+1.2
3,253,029	-		PFLU_RS14550	0.60	-1.0
3,253,074	+		PFLU_RS14550	0.66	+0.9
3,253,139	+		PFLU_RS14550	0.74	+2.1
3,253,140	-		PFLU_RS14550	0.74	+1.2
3,253,256	+		PFLU_RS14550	0.88	+2.7
3,253,257	-		PFLU_RS14550	0.88	+2.0
3,253,257	-		PFLU_RS14550	0.88	+1.1
3,253,257	-		PFLU_RS14550	0.88	-1.7
3,253,257	-		PFLU_RS14550	0.88	-0.6
3,253,257	-		PFLU_RS14550	0.88	+5.5
3,253,302	-				+4.3
3,253,302	-				+1.6
3,253,325	+				+4.1
3,253,337	+				-1.7
3,253,337	+				-0.4
3,253,338	-				-1.4
3,253,338	-				-3.0
3,253,338	-				+2.6
3,253,338	-				-2.1
3,253,338	-				-0.7
3,253,368	+				+0.3
3,253,429	+				-0.8
3,253,429	+				-0.2
3,253,429	+				-3.3
3,253,429	+				-2.2
3,253,429	+				+0.7
3,253,430	-				-1.8
3,253,430	-				-1.8
3,253,430	-				-1.2
3,253,430	-				+0.6
3,253,430	-				-3.2
3,253,430	-				+0.1
3,253,430	-				-0.6
3,253,430	-				-0.1
3,253,430	-				+0.6
3,253,430	-				+0.5
3,253,430	-				-0.5
3,253,430	-				+0.9
3,253,437	+				+1.4
3,253,472	+				+1.0
3,253,487	+				+0.4
3,253,487	+				-1.2
3,253,487	+				-0.1
3,253,487	+				-2.9
3,253,487	+				+0.1
3,253,487	+				-0.9
3,253,487	+				+0.8
3,253,487	+				+2.2
3,253,487	+				-2.6
3,253,487	+				-0.8
3,253,487	+				+0.9
3,253,487	+				+1.7
3,253,487	+				+3.7
3,253,487	+				+0.5
3,253,488	-				-2.8
3,253,488	-				-0.0
3,253,488	-				-0.9
3,253,488	-				-3.0
3,253,488	-				+0.7
3,253,488	-				-0.0
3,253,488	-				-0.8
3,253,488	-				+1.1
3,253,488	-				-1.1
3,253,488	-				-2.4
3,253,488	-				-0.4
3,253,488	-				+1.0
3,253,491	+				+1.2
3,253,491	+				+0.5
3,253,491	+				-1.2
3,253,492	-				+0.2
3,253,492	-				-2.4
3,253,492	-				+1.8
3,253,492	-				-0.0
3,253,492	-				+2.0
3,253,628	+		PFLU_RS14555	0.12	-3.2
3,253,628	+		PFLU_RS14555	0.12	+0.2
3,253,628	+		PFLU_RS14555	0.12	-0.1
3,253,628	+		PFLU_RS14555	0.12	-1.2
3,253,629	-		PFLU_RS14555	0.12	-0.6
3,253,758	-		PFLU_RS14555	0.21	+0.2
3,253,758	-		PFLU_RS14555	0.21	-1.4
3,253,991	+		PFLU_RS14555	0.39	-0.4
3,253,991	+		PFLU_RS14555	0.39	-0.6
3,253,991	+		PFLU_RS14555	0.39	+0.6
3,253,991	+		PFLU_RS14555	0.39	+0.6
3,253,991	+		PFLU_RS14555	0.39	-1.1
3,253,992	-		PFLU_RS14555	0.39	-1.7
3,253,992	-		PFLU_RS14555	0.39	+1.5
3,253,992	-		PFLU_RS14555	0.39	-1.8
3,253,992	-		PFLU_RS14555	0.39	-1.2
3,253,992	-		PFLU_RS14555	0.39	-1.0
3,254,238	-		PFLU_RS14555	0.57	-0.4
3,254,238	-		PFLU_RS14555	0.57	+0.7
3,254,238	-		PFLU_RS14555	0.57	+1.0
3,254,468	+		PFLU_RS14555	0.74	-1.4
3,254,468	+		PFLU_RS14555	0.74	-1.2
3,254,517	+		PFLU_RS14555	0.77	+0.2
3,254,518	-		PFLU_RS14555	0.77	+3.0
3,254,554	+		PFLU_RS14555	0.80	-1.7
3,254,554	+		PFLU_RS14555	0.80	-0.6
3,254,554	+		PFLU_RS14555	0.80	-2.4
3,254,559	+		PFLU_RS14555	0.80	-3.2
3,254,559	+		PFLU_RS14555	0.80	-2.2
3,254,559	+		PFLU_RS14555	0.80	-0.6
3,254,559	+		PFLU_RS14555	0.80	+1.0
3,254,559	+		PFLU_RS14555	0.80	-1.2
3,254,560	-		PFLU_RS14555	0.81	-1.6
3,254,560	-		PFLU_RS14555	0.81	-1.2
3,254,560	-		PFLU_RS14555	0.81	-2.4
3,254,560	-		PFLU_RS14555	0.81	+1.2
3,254,560	-		PFLU_RS14555	0.81	-0.8
3,254,560	-		PFLU_RS14555	0.81	-2.3
3,254,560	-		PFLU_RS14555	0.81	+1.0
3,254,560	-		PFLU_RS14555	0.81	-1.5
3,254,560	-		PFLU_RS14555	0.81	-0.0
3,254,560	-		PFLU_RS14555	0.81	-0.6
3,254,560	-		PFLU_RS14555	0.81	-1.0
3,254,560	-		PFLU_RS14555	0.81	+0.4
3,254,560	-		PFLU_RS14555	0.81	-1.6
3,254,777	-				-1.9
3,254,887	+				+1.6
3,254,888	-				-2.9
3,254,888	-				-0.4
3,255,044	+		PFLU_RS14560	0.22	+1.6
3,255,044	+		PFLU_RS14560	0.22	-1.5
3,255,044	+		PFLU_RS14560	0.22	-2.3
3,255,045	-		PFLU_RS14560	0.22	-0.1
3,255,045	-		PFLU_RS14560	0.22	-3.0
3,255,045	-		PFLU_RS14560	0.22	+1.5
3,255,045	-		PFLU_RS14560	0.22	+1.2
3,255,045	-		PFLU_RS14560	0.22	+1.0
3,255,045	-		PFLU_RS14560	0.22	-1.9
3,255,364	-		PFLU_RS14560	0.53	-2.8
3,255,519	-		PFLU_RS14560	0.69	+1.5
3,255,696	+		PFLU_RS14560	0.86	-1.7
3,255,697	-		PFLU_RS14560	0.87	+1.6
3,255,744	-				+1.6
3,255,744	-				+0.7
3,255,803	+				-1.2
3,255,804	-				+0.5
3,255,804	-				+1.2
3,255,804	-				-1.4
3,255,804	-				+0.9
3,255,812	-				-0.3
3,255,814	+				+0.4
3,255,814	+				-1.9
3,255,815	-				-0.6
3,255,815	-				+1.1