Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS08285

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs
1,849,861	+				+0.5
1,849,861	+				+1.1
1,849,909	+				-2.6
1,849,909	+				+1.7
1,849,909	+				+1.5
1,849,909	+				-0.2
1,849,909	+				-1.2
1,849,910	-				-0.9
1,849,910	-				+1.6
1,849,910	-				+2.1
1,849,910	-				-0.4
1,849,910	-				-3.0
1,849,910	-				+0.2
1,849,910	-				-0.5
1,849,910	-				-0.5
1,849,910	-				-0.4
1,849,910	-				-0.2
1,849,946	+				+0.4
1,849,946	+				+1.2
1,849,946	+				-1.7
1,849,946	+				+1.5
1,849,947	-				+0.6
1,850,021	+		PFLU_RS08275	0.22	+0.2
1,850,021	+		PFLU_RS08275	0.22	-1.8
1,850,022	-		PFLU_RS08275	0.22	+1.2
1,850,022	-		PFLU_RS08275	0.22	-0.8
1,850,022	-		PFLU_RS08275	0.22	-1.2
1,850,022	-		PFLU_RS08275	0.22	-0.7
1,850,022	-		PFLU_RS08275	0.22	-3.0
1,850,076	+		PFLU_RS08275	0.36	+1.6
1,850,077	-		PFLU_RS08275	0.36	+0.3
1,850,077	-		PFLU_RS08275	0.36	+0.2
1,850,090	+		PFLU_RS08275	0.40	-1.0
1,850,096	+		PFLU_RS08275	0.41	-2.1
1,850,096	+		PFLU_RS08275	0.41	-1.4
1,850,096	+		PFLU_RS08275	0.41	+0.3
1,850,096	+		PFLU_RS08275	0.41	+0.6
1,850,096	+		PFLU_RS08275	0.41	-1.7
1,850,096	+		PFLU_RS08275	0.41	+0.6
1,850,096	+		PFLU_RS08275	0.41	-1.2
1,850,096	+		PFLU_RS08275	0.41	+2.4
1,850,096	+		PFLU_RS08275	0.41	-2.7
1,850,097	-		PFLU_RS08275	0.41	-1.5
1,850,097	-		PFLU_RS08275	0.41	+2.1
1,850,097	-		PFLU_RS08275	0.41	+0.4
1,850,097	-		PFLU_RS08275	0.41	-0.4
1,850,097	-		PFLU_RS08275	0.41	-2.8
1,850,097	-		PFLU_RS08275	0.41	-3.0
1,850,116	+		PFLU_RS08275	0.46	-0.0
1,850,119	+		PFLU_RS08275	0.47	-2.0
1,850,119	+		PFLU_RS08275	0.47	+0.5
1,850,119	+		PFLU_RS08275	0.47	-0.3
1,850,119	+		PFLU_RS08275	0.47	-3.6
1,850,120	-		PFLU_RS08275	0.47	-1.8
1,850,120	-		PFLU_RS08275	0.47	-1.0
1,850,120	-		PFLU_RS08275	0.47	+1.0
1,850,124	+		PFLU_RS08275	0.48	-1.4
1,850,129	+		PFLU_RS08275	0.50	-2.7
1,850,129	+		PFLU_RS08275	0.50	+0.8
1,850,129	+		PFLU_RS08275	0.50	+2.5
1,850,129	+		PFLU_RS08275	0.50	+0.0
1,850,129	+		PFLU_RS08275	0.50	+2.7
1,850,130	-		PFLU_RS08275	0.50	-0.1
1,850,130	-		PFLU_RS08275	0.50	+0.8
1,850,130	-		PFLU_RS08275	0.50	+0.9
1,850,172	+		PFLU_RS08275	0.61	-2.9
1,850,173	-		PFLU_RS08275	0.61	-1.0
1,850,193	-		PFLU_RS08275	0.66	+0.8
1,850,283	-		PFLU_RS08275	0.89	+0.3
1,850,341	-				-1.0
1,850,348	-				+0.4
1,850,378	-				+0.5
1,850,588	+		PFLU_RS08280	0.54	+0.8
1,850,588	+		PFLU_RS08280	0.54	-0.3
1,850,588	+		PFLU_RS08280	0.54	+0.4
1,850,588	+		PFLU_RS08280	0.54	+1.2
1,850,589	-		PFLU_RS08280	0.54	-0.1
1,850,589	-		PFLU_RS08280	0.54	-2.0
1,850,589	-		PFLU_RS08280	0.54	-2.5
1,850,591	-		PFLU_RS08280	0.55	-1.5
1,850,591	-		PFLU_RS08280	0.55	+0.4
1,850,638	-		PFLU_RS08280	0.66	+1.9
1,850,676	+		PFLU_RS08280	0.76	-0.9
1,850,745	-				+0.8
1,850,750	+				-3.3
1,850,751	-				+1.4
1,850,751	-				-2.6
1,850,751	-				-0.5
1,850,754	+				+0.9
1,850,754	+				+1.5
1,850,754	+				+0.4
1,850,755	-				-1.8
1,850,755	-				-2.7
1,850,792	+				+3.9
1,850,792	+				-1.2
1,850,793	-				+2.4
1,850,793	-				-2.1
1,850,850	+				+0.7
1,850,851	-				+0.2
1,850,851	-				+0.3
1,850,981	-		PFLU_RS08285	0.40	-1.2
1,851,002	-		PFLU_RS08285	0.45	+1.6
1,851,010	-		PFLU_RS08285	0.47	-1.8
1,851,029	-		PFLU_RS08285	0.51	-1.4
1,851,039	+		PFLU_RS08285	0.54	-1.8
1,851,046	+		PFLU_RS08285	0.56	+0.6
1,851,047	-		PFLU_RS08285	0.56	+0.2
1,851,070	+		PFLU_RS08285	0.62	-0.8
1,851,071	-		PFLU_RS08285	0.62	-2.0
1,851,071	-		PFLU_RS08285	0.62	-2.8
1,851,071	-		PFLU_RS08285	0.62	-0.9
1,851,087	-		PFLU_RS08285	0.66	-0.0
1,851,125	+		PFLU_RS08285	0.75	-1.7
1,851,131	+		PFLU_RS08285	0.77	+0.1
1,851,141	-		PFLU_RS08285	0.79	-1.4
1,851,288	+				-2.2
1,851,289	-				-1.5
1,851,295	+				-0.2
1,851,295	+				-0.1
1,851,370	-				-1.8
1,851,405	-				+0.2
1,851,482	+				+0.8
1,851,514	-				-2.9
1,851,541	+				+1.2
1,851,541	+				-1.0
1,851,542	-				-2.0
1,851,542	-				-0.8
1,851,542	-				-1.0
1,851,542	-				-0.5
1,851,543	+				-0.6
1,851,543	+				-2.1
1,851,544	-				+0.9
1,851,544	-				-3.4
1,851,544	-				-1.4
1,851,580	-				+1.0
1,851,610	-				+0.4
1,851,677	-				-0.2
1,851,677	-				+1.1
1,851,677	-				+0.4
1,851,677	-				-0.4
1,851,677	-				+0.5
1,851,677	-				+1.9
1,851,677	-				+0.8
1,851,677	-				-2.5
1,851,677	-				-1.2
1,851,702	-		PFLU_RS08290	0.10	-1.0
1,851,702	-		PFLU_RS08290	0.10	+1.2
1,851,702	-		PFLU_RS08290	0.10	+1.3
1,851,702	-		PFLU_RS08290	0.10	-3.5
1,851,702	-		PFLU_RS08290	0.10	+0.9
1,851,702	-		PFLU_RS08290	0.10	-1.4
1,851,702	-		PFLU_RS08290	0.10	+0.1
1,851,702	-		PFLU_RS08290	0.10	-1.3
1,851,702	-		PFLU_RS08290	0.10	-0.1
1,851,702	-		PFLU_RS08290	0.10	-1.7
1,851,708	-		PFLU_RS08290	0.10	-1.4
1,851,708	-		PFLU_RS08290	0.10	+0.0
1,851,962	+		PFLU_RS08290	0.16	+1.6
1,851,965	+		PFLU_RS08290	0.16	-1.3
1,851,965	+		PFLU_RS08290	0.16	-0.5
1,851,965	+		PFLU_RS08290	0.16	-3.8
1,851,965	+		PFLU_RS08290	0.16	+0.5
1,851,965	+		PFLU_RS08290	0.16	+2.6
1,851,965	+		PFLU_RS08290	0.16	-0.7
1,851,965	+		PFLU_RS08290	0.16	+0.0
1,851,965	+		PFLU_RS08290	0.16	-1.3
1,851,965	+		PFLU_RS08290	0.16	+1.9
1,851,965	+		PFLU_RS08290	0.16	+0.1
1,851,965	+		PFLU_RS08290	0.16	+0.3
1,851,965	+		PFLU_RS08290	0.16	-1.3
1,851,965	+		PFLU_RS08290	0.16	+0.1
1,851,965	+		PFLU_RS08290	0.16	+0.5
1,851,965	+		PFLU_RS08290	0.16	-1.2
1,851,965	+		PFLU_RS08290	0.16	+1.6
1,851,966	-		PFLU_RS08290	0.16	-0.1
1,851,966	-		PFLU_RS08290	0.16	+3.7
1,851,966	-		PFLU_RS08290	0.16	-2.6
1,851,966	-		PFLU_RS08290	0.16	-0.7
1,851,966	-		PFLU_RS08290	0.16	-0.1
1,851,966	-		PFLU_RS08290	0.16	+0.7
1,851,966	-		PFLU_RS08290	0.16	-0.4
1,851,966	-		PFLU_RS08290	0.16	+2.8
1,851,966	-		PFLU_RS08290	0.16	+0.7
1,851,966	-		PFLU_RS08290	0.16	-0.3
1,851,966	-		PFLU_RS08290	0.16	+2.4
1,851,966	-		PFLU_RS08290	0.16	-1.4
1,851,966	-		PFLU_RS08290	0.16	-2.1
1,851,969	-		PFLU_RS08290	0.16	+1.1
1,851,969	-		PFLU_RS08290	0.16	-0.8
1,851,969	-		PFLU_RS08290	0.16	+1.2
1,851,969	-		PFLU_RS08290	0.16	+0.4
1,851,969	-		PFLU_RS08290	0.16	-0.5
1,851,969	-		PFLU_RS08290	0.16	-2.6
1,851,969	-		PFLU_RS08290	0.16	-2.2
1,851,969	-		PFLU_RS08290	0.16	+2.9
1,851,969	-		PFLU_RS08290	0.16	-2.7
1,851,969	-		PFLU_RS08290	0.16	-1.7
1,852,034	+		PFLU_RS08290	0.17	-0.5
1,852,034	+		PFLU_RS08290	0.17	+0.4
1,852,034	+		PFLU_RS08290	0.17	+0.2
1,852,035	-		PFLU_RS08290	0.17	+0.4
1,852,035	-		PFLU_RS08290	0.17	-2.2
1,852,035	-		PFLU_RS08290	0.17	-1.5
1,852,040	+		PFLU_RS08290	0.17	-1.4
1,852,040	+		PFLU_RS08290	0.17	-0.0
1,852,040	+		PFLU_RS08290	0.17	-2.2
1,852,040	+		PFLU_RS08290	0.17	+2.1
1,852,040	+		PFLU_RS08290	0.17	-1.1
1,852,040	+		PFLU_RS08290	0.17	+0.5
1,852,040	+		PFLU_RS08290	0.17	+1.3
1,852,040	+		PFLU_RS08290	0.17	-3.1
1,852,040	+		PFLU_RS08290	0.17	-2.4
1,852,040	+		PFLU_RS08290	0.17	+2.6
1,852,040	+		PFLU_RS08290	0.17	+0.2
1,852,040	+		PFLU_RS08290	0.17	+2.3
1,852,040	+		PFLU_RS08290	0.17	-0.5
1,852,040	+		PFLU_RS08290	0.17	-3.5
1,852,040	+		PFLU_RS08290	0.17	-0.5
1,852,041	-		PFLU_RS08290	0.17	-2.2
1,852,041	-		PFLU_RS08290	0.17	+0.4
1,852,041	-		PFLU_RS08290	0.17	-0.5
1,852,041	-		PFLU_RS08290	0.17	-2.0
1,852,041	-		PFLU_RS08290	0.17	-1.4
1,852,041	-		PFLU_RS08290	0.17	+0.1
1,852,041	-		PFLU_RS08290	0.17	+1.5
1,852,041	-		PFLU_RS08290	0.17	-0.1
1,852,041	-		PFLU_RS08290	0.17	-0.5
1,852,041	-		PFLU_RS08290	0.17	+0.7
1,852,107	+		PFLU_RS08290	0.19	-1.0
1,852,157	+		PFLU_RS08290	0.20	-1.4
1,852,214	+		PFLU_RS08290	0.21	+0.0
1,852,215	-		PFLU_RS08290	0.21	-3.5