Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS07195

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs
1,605,544	+		PFLU_RS07190	0.52	-0.9
1,605,544	+		PFLU_RS07190	0.52	+1.0
1,605,544	+		PFLU_RS07190	0.52	+0.1
1,605,544	+		PFLU_RS07190	0.52	+2.0
1,605,544	+		PFLU_RS07190	0.52	-2.9
1,605,544	+		PFLU_RS07190	0.52	-0.1
1,605,545	-		PFLU_RS07190	0.52	+1.1
1,605,545	-		PFLU_RS07190	0.52	-1.0
1,605,545	-		PFLU_RS07190	0.52	-0.0
1,605,545	-		PFLU_RS07190	0.52	-3.1
1,605,545	-		PFLU_RS07190	0.52	-1.2
1,605,545	-		PFLU_RS07190	0.52	-1.6
1,605,545	-		PFLU_RS07190	0.52	+1.4
1,605,545	-		PFLU_RS07190	0.52	+0.8
1,605,545	-		PFLU_RS07190	0.52	-0.6
1,605,545	-		PFLU_RS07190	0.52	+1.1
1,605,545	-		PFLU_RS07190	0.52	+2.3
1,605,549	+		PFLU_RS07190	0.52	+0.7
1,605,549	+		PFLU_RS07190	0.52	+0.5
1,605,549	+		PFLU_RS07190	0.52	-1.9
1,605,549	+		PFLU_RS07190	0.52	+0.5
1,605,549	+		PFLU_RS07190	0.52	+1.0
1,605,549	+		PFLU_RS07190	0.52	+1.1
1,605,549	+		PFLU_RS07190	0.52	-0.5
1,605,549	+		PFLU_RS07190	0.52	+1.3
1,605,549	+		PFLU_RS07190	0.52	+0.2
1,605,550	-		PFLU_RS07190	0.53	-1.7
1,605,550	-		PFLU_RS07190	0.53	+1.2
1,605,550	-		PFLU_RS07190	0.53	-1.9
1,605,550	-		PFLU_RS07190	0.53	-0.5
1,605,550	-		PFLU_RS07190	0.53	+0.1
1,605,550	-		PFLU_RS07190	0.53	+2.6
1,605,550	-		PFLU_RS07190	0.53	+0.5
1,605,596	+		PFLU_RS07190	0.56	-2.0
1,605,597	-		PFLU_RS07190	0.56	-0.6
1,605,630	+		PFLU_RS07190	0.58	+1.5
1,605,630	+		PFLU_RS07190	0.58	-0.9
1,605,630	+		PFLU_RS07190	0.58	+0.1
1,605,630	+		PFLU_RS07190	0.58	-0.8
1,605,630	+		PFLU_RS07190	0.58	-3.1
1,605,630	+		PFLU_RS07190	0.58	-0.1
1,605,631	-		PFLU_RS07190	0.58	+1.1
1,605,631	-		PFLU_RS07190	0.58	-0.0
1,605,678	+		PFLU_RS07190	0.61	+0.5
1,605,678	+		PFLU_RS07190	0.61	+0.1
1,605,678	+		PFLU_RS07190	0.61	-3.4
1,605,678	+		PFLU_RS07190	0.61	+0.9
1,605,678	+		PFLU_RS07190	0.61	+2.0
1,605,678	+		PFLU_RS07190	0.61	-0.9
1,605,678	+		PFLU_RS07190	0.61	-1.0
1,605,678	+		PFLU_RS07190	0.61	+0.2
1,605,678	+		PFLU_RS07190	0.61	-0.2
1,605,679	-		PFLU_RS07190	0.61	-1.5
1,605,679	-		PFLU_RS07190	0.61	+0.4
1,605,679	-		PFLU_RS07190	0.61	-0.9
1,605,679	-		PFLU_RS07190	0.61	+0.8
1,605,679	-		PFLU_RS07190	0.61	-0.3
1,605,679	-		PFLU_RS07190	0.61	-1.9
1,605,802	+		PFLU_RS07190	0.70	+0.6
1,605,802	+		PFLU_RS07190	0.70	-1.6
1,605,802	+		PFLU_RS07190	0.70	+3.4
1,605,803	-		PFLU_RS07190	0.70	+1.0
1,605,803	-		PFLU_RS07190	0.70	-3.1
1,605,803	-		PFLU_RS07190	0.70	-2.1
1,605,838	+		PFLU_RS07190	0.72	-3.0
1,605,838	+		PFLU_RS07190	0.72	+0.9
1,605,838	+		PFLU_RS07190	0.72	+1.9
1,605,838	+		PFLU_RS07190	0.72	+1.4
1,605,838	+		PFLU_RS07190	0.72	+1.4
1,605,839	-		PFLU_RS07190	0.73	-2.4
1,605,839	-		PFLU_RS07190	0.73	+0.3
1,605,839	-		PFLU_RS07190	0.73	-0.2
1,605,839	-		PFLU_RS07190	0.73	-0.4
1,605,839	-		PFLU_RS07190	0.73	+2.1
1,605,885	+		PFLU_RS07190	0.76	-2.5
1,605,885	+		PFLU_RS07190	0.76	-0.1
1,605,886	-		PFLU_RS07190	0.76	+0.9
1,605,891	+		PFLU_RS07190	0.76	-1.9
1,605,892	-		PFLU_RS07190	0.76	-0.4
1,605,892	-		PFLU_RS07190	0.76	+3.2
1,605,905	+		PFLU_RS07190	0.77	+1.1
1,605,905	+		PFLU_RS07190	0.77	+1.8
1,605,905	+		PFLU_RS07190	0.77	+1.0
1,605,943	+		PFLU_RS07190	0.80	+1.1
1,605,944	-		PFLU_RS07190	0.80	-1.7
1,605,944	-		PFLU_RS07190	0.80	+0.8
1,605,997	+		PFLU_RS07190	0.84	-0.7
1,605,997	+		PFLU_RS07190	0.84	+0.4
1,605,997	+		PFLU_RS07190	0.84	-1.0
1,605,998	-		PFLU_RS07190	0.84	+0.0
1,606,059	+		PFLU_RS07190	0.88	-1.8
1,606,059	+		PFLU_RS07190	0.88	+1.1
1,606,059	+		PFLU_RS07190	0.88	-2.8
1,606,059	+		PFLU_RS07190	0.88	-2.8
1,606,059	+		PFLU_RS07190	0.88	-1.5
1,606,059	+		PFLU_RS07190	0.88	+0.6
1,606,059	+		PFLU_RS07190	0.88	+1.4
1,606,059	+		PFLU_RS07190	0.88	-0.5
1,606,059	+		PFLU_RS07190	0.88	+0.8
1,606,059	+		PFLU_RS07190	0.88	-2.0
1,606,059	+		PFLU_RS07190	0.88	+1.7
1,606,059	+		PFLU_RS07190	0.88	+0.8
1,606,060	-		PFLU_RS07190	0.88	-0.1
1,606,060	-		PFLU_RS07190	0.88	-1.0
1,606,060	-		PFLU_RS07190	0.88	+0.4
1,606,060	-		PFLU_RS07190	0.88	-0.7
1,606,144	+				+0.9
1,606,144	+				+0.0
1,606,144	+				-0.3
1,606,145	-				+1.0
1,606,145	-				-0.2
1,606,145	-				+0.2
1,606,145	-				+0.3
1,606,145	-				+0.2
1,606,145	-				-0.2
1,606,145	-				+0.2
1,606,145	-				+1.5
1,606,145	-				-0.5
1,606,145	-				-2.0
1,606,145	-				-0.2
1,606,147	+				-2.0
1,606,147	+				-1.5
1,606,147	+				-0.3
1,606,147	+				+1.7
1,606,147	+				+0.5
1,606,147	+				+1.7
1,606,147	+				+1.7
1,606,147	+				+1.5
1,606,147	+				+1.0
1,606,147	+				+0.3
1,606,147	+				+0.9
1,606,147	+				-0.4
1,606,147	+				+1.5
1,606,148	-				-1.5
1,606,148	-				-0.0
1,606,148	-				-0.5
1,606,148	-				-1.4
1,606,148	-				+0.2
1,606,148	-				-1.3
1,606,148	-				-2.3
1,606,148	-				-0.7
1,606,148	-				-2.2
1,606,148	-				-0.5
1,606,148	-				-0.5
1,606,148	-				+2.1
1,606,148	-				+1.1
1,606,148	-				+0.3
1,606,148	-				+1.3
1,606,148	-				-1.0
1,606,148	-				-2.8
1,606,148	-				+0.2
1,606,148	-				-0.2
1,606,148	-				+0.0
1,606,148	-				-1.4
1,606,148	-				+0.1
1,606,148	-				+0.2
1,606,148	-				-1.7
1,606,148	-				-1.3
1,606,148	-				+0.1
1,606,148	-				+1.2
1,606,148	-				-1.4
1,606,148	-				-0.1
1,606,148	-				+0.4
1,606,148	-				+1.5
1,606,151	+				-0.5
1,606,151	+				+0.3
1,606,151	+				+0.6
1,606,151	+				+0.3
1,606,151	+				+1.1
1,606,151	+				+1.8
1,606,151	+				+0.5
1,606,151	+				-0.8
1,606,151	+				+0.7
1,606,151	+				-2.4
1,606,151	+				-2.7
1,606,151	+				-0.5
1,606,151	+				-0.6
1,606,152	-				+0.2
1,606,152	-				+1.2
1,606,152	-				-1.4
1,606,152	-				+0.9
1,606,152	-				-0.4
1,606,152	-				+0.1
1,606,152	-				+1.1
1,606,152	-				+1.0
1,606,152	-				+0.8
1,606,160	+				-3.4
1,606,160	+				+2.0
1,606,161	-				-1.5
1,606,161	-				+1.4
1,606,161	-				+0.7
1,606,209	+				-2.0
1,606,209	+				-1.3
1,606,209	+				-0.7
1,606,209	+				-3.1
1,606,209	+				+0.6
1,606,209	+				-0.1
1,606,209	+				-1.3
1,606,209	+				-0.5
1,606,209	+				-0.0
1,606,209	+				-0.3
1,606,210	-				+0.6
1,606,210	-				+2.0
1,606,210	-				+1.5
1,606,210	-				+2.8
1,606,210	-				+0.8
1,606,230	+				+0.9
1,606,235	+				-1.0
1,606,279	+				+1.3
1,606,281	+				+1.3
1,606,282	-				+0.3
1,606,303	+				+1.7
1,606,303	+				+0.2
1,606,371	+				+1.3
1,606,371	+				+1.4
1,606,371	+				+2.4
1,606,372	-				-2.4
1,606,403	+				+1.2
1,606,403	+				-2.2
1,606,404	-				-1.8
1,606,404	-				-3.2
1,606,407	+				-2.4
1,606,407	+				+1.4
1,606,408	-				-3.0
1,606,421	+				+1.6
1,606,422	-				+0.3
1,606,422	-				+0.5
1,606,437	+				-0.1
1,606,437	+				+0.4
1,606,478	-		PFLU_RS07195	0.13	-2.1
1,606,544	+		PFLU_RS07195	0.28	+1.1
1,606,544	+		PFLU_RS07195	0.28	-2.3
1,606,545	-		PFLU_RS07195	0.28	+0.1
1,606,545	-		PFLU_RS07195	0.28	-0.2
1,606,557	-		PFLU_RS07195	0.31	-0.7
1,606,557	-		PFLU_RS07195	0.31	-1.5
1,606,557	-		PFLU_RS07195	0.31	-2.3
1,606,557	-		PFLU_RS07195	0.31	-1.7
1,606,601	+		PFLU_RS07195	0.42	+0.3
1,606,666	-		PFLU_RS07195	0.57	+0.3
1,606,666	-		PFLU_RS07195	0.57	-1.3
1,606,671	-		PFLU_RS07195	0.58	-1.5
1,606,886	+				+1.4
1,606,895	+				-3.3
1,606,896	-				-1.7
1,606,896	-				-0.1
1,606,896	-				-1.0
1,606,933	-				-2.4
1,606,933	-				-1.0
1,606,972	+				-0.4
1,606,973	-				-3.5
1,606,991	+				-2.1
1,606,991	+				-3.2
1,606,991	+				+0.9
1,606,992	-				+0.3
1,606,992	-				+0.5
1,606,992	-				+2.0
1,607,005	-				-1.7
1,607,005	-				+2.3
1,607,012	+				+2.1
1,607,080	+				+0.1
1,607,080	+				-2.6
1,607,080	+				+1.0
1,607,080	+				-0.3
1,607,110	+				+0.5
1,607,110	+				-2.2
1,607,110	+				+0.2
1,607,110	+				-0.4
1,607,111	-				-4.2
1,607,121	+				+3.4
1,607,121	+				-0.2
1,607,122	-				-1.2
1,607,122	-				-2.3
1,607,122	-				+2.6
1,607,122	-				-1.8
1,607,122	-				-1.3
1,607,136	+				+1.0
1,607,136	+				-0.2
1,607,136	+				-0.3
1,607,137	-				-1.2
1,607,137	-				+0.3
1,607,137	-				+0.5
1,607,137	-				-2.0
1,607,153	+				-3.3
1,607,154	-				+0.7
1,607,154	-				+1.1
1,607,171	+				+2.4
1,607,181	+				-1.0
1,607,182	-				+0.0
1,607,190	-				+1.2
1,607,217	-				+2.1
1,607,271	+				-2.9
1,607,272	-				-2.6
1,607,379	+				-0.2
1,607,380	-				+0.2
1,607,401	+				-0.9
1,607,424	+				-3.2
1,607,424	+				-1.7
1,607,442	+				-3.4
1,607,442	+				+0.4
1,607,442	+				-0.8
1,607,443	-				+2.4
1,607,443	-				-0.2
1,607,443	-				+0.7
1,607,443	-				+1.7
1,607,443	-				+0.5
1,607,443	-				-2.4
1,607,443	-				+0.2
1,607,444	+				+1.0
1,607,444	+				-2.9
1,607,444	+				+0.9
1,607,444	+				+1.4
1,607,444	+				+1.9
1,607,444	+				+1.5
1,607,444	+				+1.4
1,607,445	-				-0.5
1,607,445	-				-0.5
1,607,445	-				-0.5
1,607,445	-				-2.6
1,607,557	+				+0.8
1,607,557	+				+0.9
1,607,558	-				-0.6
1,607,558	-				-3.1
1,607,560	+				+1.3
1,607,560	+				+0.9
1,607,560	+				+0.3
1,607,560	+				-1.9
1,607,561	-				+0.5
1,607,561	-				-3.0
1,607,561	-				+0.2
1,607,561	-				+2.5
1,607,561	-				+0.5
1,607,567	-				-3.2
1,607,661	+		PFLU_RS07200	0.13	+1.7
1,607,661	+		PFLU_RS07200	0.13	-3.5
1,607,661	+		PFLU_RS07200	0.13	-3.6
1,607,661	+		PFLU_RS07200	0.13	-2.7
1,607,661	+		PFLU_RS07200	0.13	-0.3
1,607,661	+		PFLU_RS07200	0.13	+2.2
1,607,662	-		PFLU_RS07200	0.13	+0.4
1,607,662	-		PFLU_RS07200	0.13	+0.2
1,607,662	-		PFLU_RS07200	0.13	-0.9
1,607,662	-		PFLU_RS07200	0.13	-1.5
1,607,670	+		PFLU_RS07200	0.14	-1.8
1,607,670	+		PFLU_RS07200	0.14	-1.8
1,607,671	-		PFLU_RS07200	0.14	-3.6
1,607,671	-		PFLU_RS07200	0.14	+1.9
1,607,671	-		PFLU_RS07200	0.14	+0.9
1,607,671	-		PFLU_RS07200	0.14	+1.5
1,607,671	-		PFLU_RS07200	0.14	-3.4
1,607,671	-		PFLU_RS07200	0.14	+1.6
1,607,671	-		PFLU_RS07200	0.14	+0.3
1,607,705	+		PFLU_RS07200	0.19	+1.6
1,607,705	+		PFLU_RS07200	0.19	+0.0
1,607,705	+		PFLU_RS07200	0.19	+1.4
1,607,705	+		PFLU_RS07200	0.19	-0.9
1,607,705	+		PFLU_RS07200	0.19	+2.1
1,607,705	+		PFLU_RS07200	0.19	-0.5
1,607,705	+		PFLU_RS07200	0.19	+0.2
1,607,705	+		PFLU_RS07200	0.19	-1.0
1,607,705	+		PFLU_RS07200	0.19	-0.5
1,607,705	+		PFLU_RS07200	0.19	-2.8
1,607,705	+		PFLU_RS07200	0.19	-0.8
1,607,705	+		PFLU_RS07200	0.19	-2.7
1,607,705	+		PFLU_RS07200	0.19	-1.4
1,607,706	-		PFLU_RS07200	0.19	-1.1
1,607,706	-		PFLU_RS07200	0.19	+0.1
1,607,706	-		PFLU_RS07200	0.19	+1.0
1,607,706	-		PFLU_RS07200	0.19	-0.5
1,607,706	-		PFLU_RS07200	0.19	-3.3
1,607,706	-		PFLU_RS07200	0.19	-0.9
1,607,706	-		PFLU_RS07200	0.19	+2.5
1,607,706	-		PFLU_RS07200	0.19	+3.3
1,607,706	-		PFLU_RS07200	0.19	-3.2
1,607,706	-		PFLU_RS07200	0.19	+1.1
1,607,706	-		PFLU_RS07200	0.19	-0.2
1,607,706	-		PFLU_RS07200	0.19	-1.5
1,607,706	-		PFLU_RS07200	0.19	+0.1
1,607,706	-		PFLU_RS07200	0.19	+1.0
1,607,706	-		PFLU_RS07200	0.19	+0.9
1,607,706	-		PFLU_RS07200	0.19	-1.8
1,607,706	-		PFLU_RS07200	0.19	-0.8
1,607,707	+		PFLU_RS07200	0.19	-1.2
1,607,707	+		PFLU_RS07200	0.19	-1.8
1,607,707	+		PFLU_RS07200	0.19	-1.0
1,607,708	-		PFLU_RS07200	0.19	+1.9
1,607,708	-		PFLU_RS07200	0.19	+0.4
1,607,708	-		PFLU_RS07200	0.19	-1.4
1,607,708	-		PFLU_RS07200	0.19	-0.2
1,607,722	+		PFLU_RS07200	0.21	+0.1
1,607,722	+		PFLU_RS07200	0.21	+0.9
1,607,722	+		PFLU_RS07200	0.21	-0.8
1,607,723	-		PFLU_RS07200	0.21	+2.2
1,607,760	+		PFLU_RS07200	0.26	-0.9
1,607,760	+		PFLU_RS07200	0.26	+3.0
1,607,761	-		PFLU_RS07200	0.26	-3.4
1,607,770	+		PFLU_RS07200	0.27	-0.3
1,607,771	-		PFLU_RS07200	0.27	-1.1
1,607,771	-		PFLU_RS07200	0.27	-2.0
1,607,805	+		PFLU_RS07200	0.32	-0.8
1,607,805	+		PFLU_RS07200	0.32	-1.5
1,607,805	+		PFLU_RS07200	0.32	-0.9
1,607,805	+		PFLU_RS07200	0.32	-2.0
1,607,806	-		PFLU_RS07200	0.32	+0.8
1,607,806	-		PFLU_RS07200	0.32	+0.8
1,607,839	+		PFLU_RS07200	0.36	-0.6