Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS04635

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs
1,035,241	+				+1.3
1,035,242	-				+2.4
1,035,242	-				+0.0
1,035,277	+				-0.5
1,035,289	-				-3.2
1,035,289	-				-0.2
1,035,373	+				-3.1
1,035,373	+				+0.6
1,035,374	-				-2.5
1,035,374	-				+0.5
1,035,374	-				-0.3
1,035,374	-				+2.4
1,035,374	-				+0.1
1,035,374	-				-0.9
1,035,419	+				+1.2
1,035,428	-				+1.2
1,035,455	+				-1.6
1,035,455	+				-1.7
1,035,455	+				+3.5
1,035,455	+				-0.6
1,035,455	+				+0.1
1,035,455	+				+2.1
1,035,455	+				-0.0
1,035,455	+				+1.1
1,035,455	+				+0.5
1,035,455	+				+1.1
1,035,456	-				-3.7
1,035,456	-				+0.3
1,035,456	-				+1.1
1,035,456	-				-2.9
1,035,462	+				+0.5
1,035,462	+				+0.9
1,035,462	+				+1.0
1,035,462	+				+1.2
1,035,463	-				-0.8
1,035,463	-				-0.5
1,035,463	-				-3.0
1,035,463	-				-1.4
1,035,525	+		PFLU_RS04630	0.18	+3.1
1,035,525	+		PFLU_RS04630	0.18	+1.2
1,035,525	+		PFLU_RS04630	0.18	-0.1
1,035,525	+		PFLU_RS04630	0.18	+0.8
1,035,525	+		PFLU_RS04630	0.18	+0.7
1,035,525	+		PFLU_RS04630	0.18	-0.4
1,035,525	+		PFLU_RS04630	0.18	-1.4
1,035,526	-		PFLU_RS04630	0.18	+0.5
1,035,526	-		PFLU_RS04630	0.18	+0.8
1,035,526	-		PFLU_RS04630	0.18	+0.8
1,035,526	-		PFLU_RS04630	0.18	-2.1
1,035,526	-		PFLU_RS04630	0.18	+1.6
1,035,578	+		PFLU_RS04630	0.25	+1.9
1,035,578	+		PFLU_RS04630	0.25	-1.4
1,035,578	+		PFLU_RS04630	0.25	-2.0
1,035,578	+		PFLU_RS04630	0.25	-0.1
1,035,578	+		PFLU_RS04630	0.25	+0.1
1,035,578	+		PFLU_RS04630	0.25	+0.2
1,035,579	-		PFLU_RS04630	0.25	-0.7
1,035,639	+		PFLU_RS04630	0.33	-2.8
1,035,640	-		PFLU_RS04630	0.33	-0.4
1,035,645	+		PFLU_RS04630	0.33	+0.0
1,035,645	+		PFLU_RS04630	0.33	+0.6
1,035,645	+		PFLU_RS04630	0.33	-1.7
1,035,645	+		PFLU_RS04630	0.33	+0.5
1,035,645	+		PFLU_RS04630	0.33	+0.8
1,035,645	+		PFLU_RS04630	0.33	-0.5
1,035,645	+		PFLU_RS04630	0.33	-1.5
1,035,646	-		PFLU_RS04630	0.33	+0.5
1,035,646	-		PFLU_RS04630	0.33	-2.7
1,035,646	-		PFLU_RS04630	0.33	-3.0
1,035,648	+		PFLU_RS04630	0.34	-1.3
1,035,648	+		PFLU_RS04630	0.34	+0.0
1,035,648	+		PFLU_RS04630	0.34	-0.4
1,035,648	+		PFLU_RS04630	0.34	+0.0
1,035,648	+		PFLU_RS04630	0.34	-2.1
1,035,648	+		PFLU_RS04630	0.34	+1.1
1,035,648	+		PFLU_RS04630	0.34	-0.9
1,035,648	+		PFLU_RS04630	0.34	-1.9
1,035,648	+		PFLU_RS04630	0.34	-2.3
1,035,649	-		PFLU_RS04630	0.34	-4.1
1,035,649	-		PFLU_RS04630	0.34	-2.7
1,035,649	-		PFLU_RS04630	0.34	+0.7
1,035,649	-		PFLU_RS04630	0.34	+0.9
1,035,649	-		PFLU_RS04630	0.34	-2.4
1,035,649	-		PFLU_RS04630	0.34	+0.8
1,035,649	-		PFLU_RS04630	0.34	+0.3
1,035,649	-		PFLU_RS04630	0.34	-0.4
1,035,649	-		PFLU_RS04630	0.34	-0.2
1,035,649	-		PFLU_RS04630	0.34	-0.7
1,035,649	-		PFLU_RS04630	0.34	-1.2
1,035,792	+		PFLU_RS04630	0.52	+1.1
1,035,792	+		PFLU_RS04630	0.52	+0.6
1,035,793	-		PFLU_RS04630	0.52	-1.0
1,035,806	+		PFLU_RS04630	0.54	+1.1
1,035,806	+		PFLU_RS04630	0.54	+1.9
1,035,806	+		PFLU_RS04630	0.54	+2.4
1,035,807	-		PFLU_RS04630	0.54	-2.0
1,035,861	+		PFLU_RS04630	0.61	-3.2
1,035,861	+		PFLU_RS04630	0.61	-1.9
1,035,862	-		PFLU_RS04630	0.61	-0.3
1,035,929	+		PFLU_RS04630	0.70	-0.1
1,035,929	+		PFLU_RS04630	0.70	+2.3
1,035,930	-		PFLU_RS04630	0.70	+2.4
1,035,933	+		PFLU_RS04630	0.71	+0.1
1,035,933	+		PFLU_RS04630	0.71	-3.1
1,035,933	+		PFLU_RS04630	0.71	+0.6
1,035,934	-		PFLU_RS04630	0.71	-0.5
1,035,934	-		PFLU_RS04630	0.71	-1.9
1,035,934	-		PFLU_RS04630	0.71	-0.5
1,035,934	-		PFLU_RS04630	0.71	+1.4
1,035,934	-		PFLU_RS04630	0.71	+3.2
1,035,934	-		PFLU_RS04630	0.71	+1.4
1,035,934	-		PFLU_RS04630	0.71	+0.1
1,035,934	-		PFLU_RS04630	0.71	-1.1
1,035,934	-		PFLU_RS04630	0.71	-1.9
1,035,934	-		PFLU_RS04630	0.71	-2.8
1,035,934	-		PFLU_RS04630	0.71	+0.7
1,036,080	+		PFLU_RS04630	0.90	+1.0
1,036,080	+		PFLU_RS04630	0.90	-0.9
1,036,143	+				-2.4
1,036,152	+				-1.4
1,036,152	+				-3.1
1,036,158	+				-0.6
1,036,158	+				-1.6
1,036,159	-				-3.0
1,036,159	-				+0.5
1,036,169	+				-1.9
1,036,173	-				+1.8
1,036,173	-				-3.3
1,036,190	+				-1.9
1,036,190	+				-1.1
1,036,191	-				-2.8
1,036,191	-				+1.1
1,036,218	+				-0.9
1,036,218	+				-1.6
1,036,219	-				+0.1
1,036,219	-				-1.3
1,036,219	-				+0.0
1,036,219	-				-2.4
1,036,219	-				+1.4
1,036,219	-				-0.8
1,036,232	+				-1.6
1,036,232	+				-0.8
1,036,232	+				-0.9
1,036,232	+				-2.5
1,036,233	-				-3.0
1,036,233	-				-0.6
1,036,328	+		PFLU_RS04635	0.18	-2.6
1,036,328	+		PFLU_RS04635	0.18	-3.6
1,036,329	-		PFLU_RS04635	0.18	-3.4
1,036,329	-		PFLU_RS04635	0.18	-0.9
1,036,411	-		PFLU_RS04635	0.32	+1.2
1,036,473	+		PFLU_RS04635	0.43	-3.6
1,036,474	-		PFLU_RS04635	0.43	-2.2
1,036,561	+		PFLU_RS04635	0.58	+1.0
1,036,562	-		PFLU_RS04635	0.58	-1.6
1,036,562	-		PFLU_RS04635	0.58	-3.2
1,036,686	+		PFLU_RS04635	0.80	+1.1
1,036,687	-		PFLU_RS04635	0.80	-3.6
1,036,687	-		PFLU_RS04635	0.80	-2.6
1,036,969	-		PFLU_RS04640	0.28	+1.7
1,037,406	-				+0.2
1,037,406	-				-2.6
1,037,406	-				-0.9
1,037,406	-				+2.7
1,037,406	-				-0.8
1,037,406	-				+0.6
1,037,406	-				+0.6
1,037,406	-				-0.6
1,037,406	-				-0.9
1,037,406	-				+2.1
1,037,406	-				-0.5
1,037,406	-				-1.3
1,037,406	-				-2.4
1,037,406	-				-0.5
1,037,406	-				-3.0
1,037,406	-				-0.5
1,037,406	-				+0.3
1,037,406	-				+1.3
1,037,406	-				-0.3
1,037,406	-				-1.2
1,037,406	-				-0.1
1,037,406	-				-2.3
1,037,406	-				-0.9
1,037,406	-				-2.3
1,037,410	-				-0.0
1,037,546	+		PFLU_RS04645	0.16	-1.6
1,037,651	-		PFLU_RS04645	0.44	-0.1
1,037,651	-		PFLU_RS04645	0.44	-0.1
1,037,651	-		PFLU_RS04645	0.44	+1.5
1,037,651	-		PFLU_RS04645	0.44	+0.5
1,037,651	-		PFLU_RS04645	0.44	-1.9
1,037,651	-		PFLU_RS04645	0.44	+0.7
1,037,689	-		PFLU_RS04645	0.55	+0.9
1,037,705	+		PFLU_RS04645	0.59	+1.7
1,037,705	+		PFLU_RS04645	0.59	-0.6
1,037,705	+		PFLU_RS04645	0.59	+1.7
1,037,705	+		PFLU_RS04645	0.59	-1.7
1,037,705	+		PFLU_RS04645	0.59	-2.0
1,037,705	+		PFLU_RS04645	0.59	+0.1
1,037,705	+		PFLU_RS04645	0.59	+0.1
1,037,706	-		PFLU_RS04645	0.59	+1.0
1,037,706	-		PFLU_RS04645	0.59	-0.3
1,037,706	-		PFLU_RS04645	0.59	+1.8
1,037,708	+		PFLU_RS04645	0.60	-0.6
1,037,708	+		PFLU_RS04645	0.60	-1.7
1,037,708	+		PFLU_RS04645	0.60	-2.0
1,037,708	+		PFLU_RS04645	0.60	-2.1
1,037,708	+		PFLU_RS04645	0.60	-0.6
1,037,708	+		PFLU_RS04645	0.60	+0.7
1,037,708	+		PFLU_RS04645	0.60	+1.7
1,037,708	+		PFLU_RS04645	0.60	-0.1
1,037,708	+		PFLU_RS04645	0.60	-2.3
1,037,708	+		PFLU_RS04645	0.60	-1.9
1,037,708	+		PFLU_RS04645	0.60	+1.7
1,037,709	-		PFLU_RS04645	0.60	-1.1
1,037,709	-		PFLU_RS04645	0.60	-2.5
1,037,709	-		PFLU_RS04645	0.60	+0.1
1,037,709	-		PFLU_RS04645	0.60	+2.5
1,037,709	-		PFLU_RS04645	0.60	-2.3
1,037,709	-		PFLU_RS04645	0.60	-0.7
1,037,709	-		PFLU_RS04645	0.60	-0.5
1,037,709	-		PFLU_RS04645	0.60	-0.3
1,037,709	-		PFLU_RS04645	0.60	-3.0
1,037,709	-		PFLU_RS04645	0.60	+0.5
1,037,709	-		PFLU_RS04645	0.60	-0.6
1,037,709	-		PFLU_RS04645	0.60	+1.9
1,037,713	+		PFLU_RS04645	0.61	+0.7
1,037,713	+		PFLU_RS04645	0.61	+0.5
1,037,713	+		PFLU_RS04645	0.61	-1.1
1,037,714	-		PFLU_RS04645	0.61	-0.9
1,037,714	-		PFLU_RS04645	0.61	+0.9
1,037,714	-		PFLU_RS04645	0.61	+0.8
1,037,752	+		PFLU_RS04645	0.72	-2.7
1,037,752	+		PFLU_RS04645	0.72	-1.4
1,037,752	+		PFLU_RS04645	0.72	+1.3
1,037,752	+		PFLU_RS04645	0.72	-0.6
1,037,752	+		PFLU_RS04645	0.72	+0.5
1,037,752	+		PFLU_RS04645	0.72	+0.8
1,037,752	+		PFLU_RS04645	0.72	-0.7
1,037,753	-		PFLU_RS04645	0.72	+0.1
1,037,753	-		PFLU_RS04645	0.72	+2.4
1,037,753	-		PFLU_RS04645	0.72	+0.5
1,037,753	-		PFLU_RS04645	0.72	+0.8
1,037,753	-		PFLU_RS04645	0.72	-0.5
1,037,753	-		PFLU_RS04645	0.72	+1.3
1,037,753	-		PFLU_RS04645	0.72	-0.0
1,037,753	-		PFLU_RS04645	0.72	+0.5
1,037,756	+		PFLU_RS04645	0.73	-3.7
1,037,756	+		PFLU_RS04645	0.73	+1.2
1,037,756	+		PFLU_RS04645	0.73	+1.7
1,037,756	+		PFLU_RS04645	0.73	-2.8
1,037,757	-		PFLU_RS04645	0.73	+4.7
1,037,757	-		PFLU_RS04645	0.73	-0.6
1,037,757	-		PFLU_RS04645	0.73	+2.2
1,037,757	-		PFLU_RS04645	0.73	+1.1
1,037,757	-		PFLU_RS04645	0.73	-0.8
1,037,757	-		PFLU_RS04645	0.73	-2.4
1,037,757	-		PFLU_RS04645	0.73	+1.1
1,037,799	+		PFLU_RS04645	0.84	-1.9
1,037,799	+		PFLU_RS04645	0.84	-1.5
1,037,800	-		PFLU_RS04645	0.84	+1.4