Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS02545 and PFLU_RS02550 overlap by 13 nucleotides PFLU_RS02550 and PFLU_RS02555 are separated by 15 nucleotides PFLU_RS02555 and PFLU_RS02560 overlap by 1 nucleotides
PFLU_RS02545: PFLU_RS02545 - NAD(P)H-hydrate dehydratase, at 584,183 to 585,043
_RS02545
PFLU_RS02550: PFLU_RS02550 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE, at 585,031 to 585,501
_RS02550
PFLU_RS02555: PFLU_RS02555 - AMIN domain-containing protein, at 585,517 to 586,938
_RS02555
PFLU_RS02560: PFLU_RS02560 - DNA mismatch repair endonuclease MutL, at 586,938 to 588,854
_RS02560
Position (kb) 585
586
587 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 584.680 kb on + strand, within PFLU_RS02545 at 584.680 kb on + strand, within PFLU_RS02545 at 584.680 kb on + strand, within PFLU_RS02545 at 584.680 kb on + strand, within PFLU_RS02545 at 584.681 kb on - strand, within PFLU_RS02545 at 584.681 kb on - strand, within PFLU_RS02545 at 584.713 kb on + strand, within PFLU_RS02545 at 584.713 kb on + strand, within PFLU_RS02545 at 584.713 kb on + strand, within PFLU_RS02545 at 584.713 kb on + strand, within PFLU_RS02545 at 584.713 kb on + strand, within PFLU_RS02545 at 584.713 kb on + strand, within PFLU_RS02545 at 584.714 kb on - strand, within PFLU_RS02545 at 584.714 kb on - strand, within PFLU_RS02545 at 584.718 kb on + strand, within PFLU_RS02545 at 584.718 kb on + strand, within PFLU_RS02545 at 584.718 kb on + strand, within PFLU_RS02545 at 584.718 kb on + strand, within PFLU_RS02545 at 585.041 kb on + strand at 585.499 kb on + strand at 585.499 kb on + strand at 585.499 kb on + strand at 585.499 kb on + strand at 585.499 kb on + strand at 585.499 kb on + strand at 585.512 kb on + strand at 585.512 kb on + strand at 585.512 kb on + strand at 585.512 kb on + strand at 585.512 kb on + strand at 585.512 kb on + strand at 585.512 kb on + strand at 586.735 kb on + strand, within PFLU_RS02555 at 586.735 kb on + strand, within PFLU_RS02555 at 586.735 kb on + strand, within PFLU_RS02555 at 586.735 kb on + strand, within PFLU_RS02555 at 586.735 kb on + strand, within PFLU_RS02555 at 586.735 kb on + strand, within PFLU_RS02555 at 586.735 kb on + strand, within PFLU_RS02555 at 586.735 kb on + strand, within PFLU_RS02555 at 586.735 kb on + strand, within PFLU_RS02555 at 586.735 kb on + strand, within PFLU_RS02555 at 586.735 kb on + strand, within PFLU_RS02555 at 586.735 kb on + strand, within PFLU_RS02555 at 586.735 kb on + strand, within PFLU_RS02555 at 586.735 kb on + strand, within PFLU_RS02555 at 586.735 kb on + strand, within PFLU_RS02555 at 586.735 kb on + strand, within PFLU_RS02555 at 586.736 kb on - strand, within PFLU_RS02555 at 586.736 kb on - strand, within PFLU_RS02555 at 586.736 kb on - strand, within PFLU_RS02555 at 586.736 kb on - strand, within PFLU_RS02555 at 586.736 kb on - strand, within PFLU_RS02555 at 586.736 kb on - strand, within PFLU_RS02555 at 586.736 kb on - strand, within PFLU_RS02555 at 586.736 kb on - strand, within PFLU_RS02555 at 586.736 kb on - strand, within PFLU_RS02555 at 586.736 kb on - strand, within PFLU_RS02555 at 586.736 kb on - strand, within PFLU_RS02555 at 586.936 kb on + strand at 586.936 kb on + strand at 586.936 kb on + strand at 586.937 kb on - strand at 586.937 kb on - strand at 586.937 kb on - strand at 586.937 kb on - strand at 586.937 kb on - strand at 587.088 kb on - strand at 587.278 kb on + strand, within PFLU_RS02560 at 587.279 kb on - strand, within PFLU_RS02560 at 587.420 kb on + strand, within PFLU_RS02560 at 587.607 kb on - strand, within PFLU_RS02560 at 587.724 kb on + strand, within PFLU_RS02560 at 587.724 kb on + strand, within PFLU_RS02560 at 587.725 kb on - strand, within PFLU_RS02560 at 587.725 kb on - strand, within PFLU_RS02560 at 587.725 kb on - strand, within PFLU_RS02560 at 587.725 kb on - strand, within PFLU_RS02560 at 587.764 kb on + strand, within PFLU_RS02560 at 587.787 kb on + strand, within PFLU_RS02560 at 587.787 kb on + strand, within PFLU_RS02560 at 587.928 kb on + strand, within PFLU_RS02560 at 587.929 kb on - strand, within PFLU_RS02560 at 587.929 kb on - strand, within PFLU_RS02560
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs remove 584,680 + PFLU_RS02545 0.58 +0.5 584,680 + PFLU_RS02545 0.58 -3.5 584,680 + PFLU_RS02545 0.58 -0.5 584,680 + PFLU_RS02545 0.58 -1.6 584,681 - PFLU_RS02545 0.58 -2.3 584,681 - PFLU_RS02545 0.58 -3.0 584,713 + PFLU_RS02545 0.62 +2.3 584,713 + PFLU_RS02545 0.62 -0.3 584,713 + PFLU_RS02545 0.62 +1.2 584,713 + PFLU_RS02545 0.62 -2.7 584,713 + PFLU_RS02545 0.62 -1.2 584,713 + PFLU_RS02545 0.62 +1.7 584,714 - PFLU_RS02545 0.62 -2.4 584,714 - PFLU_RS02545 0.62 +0.4 584,718 + PFLU_RS02545 0.62 -2.6 584,718 + PFLU_RS02545 0.62 +1.1 584,718 + PFLU_RS02545 0.62 -3.0 584,718 + PFLU_RS02545 0.62 +0.5 585,041 + +0.1 585,499 + +1.7 585,499 + +1.2 585,499 + -1.3 585,499 + +1.1 585,499 + +0.0 585,499 + +2.8 585,512 + -2.4 585,512 + -2.0 585,512 + -2.2 585,512 + -2.7 585,512 + +0.1 585,512 + -1.3 585,512 + -1.4 586,735 + PFLU_RS02555 0.86 +1.3 586,735 + PFLU_RS02555 0.86 -2.0 586,735 + PFLU_RS02555 0.86 -2.3 586,735 + PFLU_RS02555 0.86 -1.6 586,735 + PFLU_RS02555 0.86 -0.5 586,735 + PFLU_RS02555 0.86 +0.1 586,735 + PFLU_RS02555 0.86 +0.3 586,735 + PFLU_RS02555 0.86 -1.0 586,735 + PFLU_RS02555 0.86 -2.7 586,735 + PFLU_RS02555 0.86 -2.7 586,735 + PFLU_RS02555 0.86 -1.0 586,735 + PFLU_RS02555 0.86 -1.0 586,735 + PFLU_RS02555 0.86 -0.5 586,735 + PFLU_RS02555 0.86 -1.9 586,735 + PFLU_RS02555 0.86 -2.1 586,735 + PFLU_RS02555 0.86 +1.1 586,736 - PFLU_RS02555 0.86 +1.7 586,736 - PFLU_RS02555 0.86 -2.4 586,736 - PFLU_RS02555 0.86 -2.7 586,736 - PFLU_RS02555 0.86 +0.2 586,736 - PFLU_RS02555 0.86 -2.1 586,736 - PFLU_RS02555 0.86 +1.9 586,736 - PFLU_RS02555 0.86 -0.6 586,736 - PFLU_RS02555 0.86 -1.7 586,736 - PFLU_RS02555 0.86 +0.1 586,736 - PFLU_RS02555 0.86 -0.6 586,736 - PFLU_RS02555 0.86 -0.8 586,936 + +0.1 586,936 + +2.0 586,936 + +1.8 586,937 - -0.4 586,937 - -2.8 586,937 - -0.6 586,937 - +1.3 586,937 - -2.4 587,088 - -0.9 587,278 + PFLU_RS02560 0.18 -2.6 587,279 - PFLU_RS02560 0.18 -1.3 587,420 + PFLU_RS02560 0.25 -1.6 587,607 - PFLU_RS02560 0.35 +0.6 587,724 + PFLU_RS02560 0.41 -1.7 587,724 + PFLU_RS02560 0.41 -0.3 587,725 - PFLU_RS02560 0.41 -0.6 587,725 - PFLU_RS02560 0.41 -0.7 587,725 - PFLU_RS02560 0.41 -2.2 587,725 - PFLU_RS02560 0.41 +2.6 587,764 + PFLU_RS02560 0.43 +1.1 587,787 + PFLU_RS02560 0.44 +0.0 587,787 + PFLU_RS02560 0.44 +0.5 587,928 + PFLU_RS02560 0.52 +1.0 587,929 - PFLU_RS02560 0.52 -0.3 587,929 - PFLU_RS02560 0.52 -0.2
Or see this region's nucleotide sequence