Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS00405

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs
81,065	+				-3.3
81,066	-				-0.2
81,098	+				+0.8
81,098	+				-1.6
81,098	+				+0.7
81,098	+				+0.2
81,098	+				+0.4
81,098	+				-3.2
81,098	+				-0.2
81,098	+				-2.2
81,098	+				-2.1
81,098	+				-3.8
81,098	+				+0.7
81,098	+				-0.9
81,098	+				+0.3
81,098	+				+0.3
81,098	+				-0.8
81,098	+				-0.4
81,099	-				+1.2
81,099	-				-0.0
81,099	-				-1.8
81,099	-				+0.2
81,099	-				-1.2
81,099	-				+0.8
81,099	-				-2.4
81,099	-				+0.6
81,108	+				-0.0
81,108	+				+0.6
81,108	+				+0.4
81,109	-				+0.5
81,109	-				+0.3
81,122	+				+3.2
81,122	+				+2.0
81,122	+				-0.4
81,122	+				-0.9
81,122	+				+0.6
81,123	-				+3.1
81,123	-				-3.2
81,123	-				-0.9
81,177	+				+0.8
81,177	+				-2.1
81,178	-				-0.1
81,178	-				-2.9
81,925	+				-1.3
81,925	+				-1.7
81,925	+				+1.1
81,925	+				-0.9
81,925	+				+0.8
81,925	+				+1.6
81,925	+				-1.6
81,925	+				-2.5
81,925	+				-1.8
81,925	+				-1.3
81,925	+				+0.9
81,926	-				-2.7
81,926	-				-0.7
81,926	-				-1.7
81,926	-				+1.2
81,926	-				-2.5
81,927	+				+1.3
81,927	+				+0.2
81,927	+				+1.2
81,927	+				+0.1
81,927	+				+0.3
81,927	+				-2.1
81,927	+				-2.1
81,927	+				+1.6
81,927	+				-1.4
81,927	+				-0.4
81,927	+				-1.3
81,927	+				-1.7
81,927	+				-0.7
81,927	+				+1.1
81,927	+				-0.4
81,927	+				-0.5
81,927	+				-0.9
81,927	+				+0.1
81,927	+				+0.6
81,928	-				+0.9
81,928	-				-2.9
81,928	-				-1.2
81,928	-				+1.6
81,928	-				-1.4
81,928	-				-1.2
81,928	-				-1.3
81,928	-				+1.5
81,928	-				-2.3
81,928	-				-2.3
81,928	-				+0.8
81,928	-				+1.6
81,928	-				+1.6
81,928	-				-0.9
81,929	+				+1.1
81,929	+				-1.8
81,929	+				+0.7
81,929	+				-0.9
81,929	+				+2.6
81,929	+				-3.1
81,929	+				-1.5
81,929	+				-0.0
81,929	+				+0.7
81,929	+				-1.9
81,930	-				-1.2
81,930	-				-0.4
81,930	-				+1.2
81,930	-				+0.1
81,930	-				-0.2
81,930	-				+0.1
81,930	-				-0.7
81,930	-				-0.4
81,930	-				+1.6
81,930	-				+1.4
81,930	-				-2.1
81,930	-				-1.2
81,996	+				-0.2
81,996	+				-1.4
81,997	-				-0.4
81,997	-				-0.4
82,006	+				+0.6
82,006	+				-0.9
82,006	+				+3.0
82,006	+				-0.4
82,006	+				+1.0
82,006	+				+2.6
82,007	-				-1.4
82,007	-				-0.1
82,007	-				+2.4
82,007	-				-1.4
82,007	-				-2.5
82,007	-				-2.3
82,045	+				-2.9
82,045	+				-0.0
82,045	+				-1.4
82,045	+				+0.7
82,045	+				-1.2
82,045	+				-3.1
82,045	+				+0.1
82,045	+				-1.4
82,045	+				+1.3
82,045	+				+0.7
82,045	+				-1.5
82,046	-				-1.9
82,046	-				-1.4
82,046	-				-1.2
82,046	-				-1.2
82,046	-				-0.4
82,046	-				+0.6
82,046	-				+0.9
82,046	-				-1.8
82,046	-				-0.7
82,046	-				+1.1
82,046	-				-1.7
82,046	-				-2.6
82,046	-				-2.5
82,046	-				-0.4
82,046	-				+3.4
82,046	-				-1.9
82,088	+		PFLU_RS00405	0.14	-2.1
82,089	-		PFLU_RS00405	0.14	+1.6
82,102	+		PFLU_RS00405	0.18	+1.8
82,103	-		PFLU_RS00405	0.19	-1.4
82,103	-		PFLU_RS00405	0.19	-0.7
82,103	-		PFLU_RS00405	0.19	-1.8
82,103	-		PFLU_RS00405	0.19	-0.7
82,103	-		PFLU_RS00405	0.19	-2.2
82,103	-		PFLU_RS00405	0.19	+1.6
82,124	+		PFLU_RS00405	0.26	-0.4
82,124	+		PFLU_RS00405	0.26	-3.2
82,124	+		PFLU_RS00405	0.26	-1.4
82,124	+		PFLU_RS00405	0.26	-1.7
82,124	+		PFLU_RS00405	0.26	-3.5
82,124	+		PFLU_RS00405	0.26	+2.8
82,125	-		PFLU_RS00405	0.26	+0.6
82,125	-		PFLU_RS00405	0.26	-0.7
82,125	-		PFLU_RS00405	0.26	+1.6
82,125	-		PFLU_RS00405	0.26	-1.0
82,125	-		PFLU_RS00405	0.26	-0.7
82,125	-		PFLU_RS00405	0.26	-0.7
82,125	-		PFLU_RS00405	0.26	-1.2
82,125	-		PFLU_RS00405	0.26	-1.4
82,294	+		PFLU_RS00405	0.82	-2.4
82,294	+		PFLU_RS00405	0.82	-2.2
82,294	+		PFLU_RS00405	0.82	-3.8
82,295	-		PFLU_RS00405	0.82	-0.7
82,295	-		PFLU_RS00405	0.82	+2.9
82,333	+				-1.5
82,333	+				+0.4
82,333	+				-1.7
82,334	-				-1.7
82,346	+				-0.9
82,346	+				+2.6
82,346	+				+0.2
82,346	+				+2.3
82,346	+				-2.2
82,346	+				-1.2
82,346	+				+0.9
82,346	+				-3.8
82,346	+				-0.4
82,346	+				+2.3
82,346	+				+0.7
82,346	+				-1.9
82,346	+				-0.7
82,346	+				-2.1
82,346	+				-0.7
82,346	+				-2.5
82,346	+				-1.2
82,347	-				+1.6
82,347	-				-2.1
82,347	-				+0.1
82,347	-				-1.2
82,347	-				-0.9
82,347	-				-2.3
82,347	-				-0.7
82,347	-				+3.6
82,347	-				+0.1
82,347	-				+0.9
82,347	-				-1.5
82,347	-				+0.6
82,347	-				-0.7
82,347	-				+1.6
82,347	-				+1.6
82,353	+				-0.4
82,353	+				-0.1
82,353	+				+1.6
82,353	+				-0.7
82,353	+				-0.7
82,353	+				-1.2
82,353	+				-1.7
82,354	-				+0.6
82,354	-				-0.4
82,354	-				+0.6
82,354	-				-2.3
82,354	-				+0.6
82,354	-				+1.6
82,368	+				+2.7
82,368	+				+0.1
82,368	+				-1.2
82,368	+				-0.4
82,368	+				-1.4
82,369	-				-0.9
82,369	-				-1.4
82,369	-				+0.6
82,369	-				-0.4
82,377	+				+4.2
82,377	+				-1.5
82,377	+				+2.8
82,377	+				-1.2
82,378	-				-2.1
82,458	-		PFLU_RS00410	0.12	+1.6
82,458	-		PFLU_RS00410	0.12	-0.9
82,495	+		PFLU_RS00410	0.18	-1.4
82,495	+		PFLU_RS00410	0.18	-1.2
82,495	+		PFLU_RS00410	0.18	-2.2
82,495	+		PFLU_RS00410	0.18	-1.2
82,495	+		PFLU_RS00410	0.18	-0.4
82,495	+		PFLU_RS00410	0.18	-1.2
82,495	+		PFLU_RS00410	0.18	-0.7
82,495	+		PFLU_RS00410	0.18	-1.5
82,495	+		PFLU_RS00410	0.18	-1.4
82,495	+		PFLU_RS00410	0.18	-1.2
82,495	+		PFLU_RS00410	0.18	-1.2
82,495	+		PFLU_RS00410	0.18	-0.4
82,495	+		PFLU_RS00410	0.18	+0.1
82,495	+		PFLU_RS00410	0.18	+0.6
82,495	+		PFLU_RS00410	0.18	-0.9
82,495	+		PFLU_RS00410	0.18	-0.9
82,495	+		PFLU_RS00410	0.18	+1.6
82,495	+		PFLU_RS00410	0.18	+0.6
82,495	+		PFLU_RS00410	0.18	-2.1
82,495	+		PFLU_RS00410	0.18	-0.7
82,495	+		PFLU_RS00410	0.18	+1.6
82,496	-		PFLU_RS00410	0.18	-0.7
82,496	-		PFLU_RS00410	0.18	-0.7
82,496	-		PFLU_RS00410	0.18	-0.4
82,496	-		PFLU_RS00410	0.18	-1.5
82,496	-		PFLU_RS00410	0.18	+1.6
82,496	-		PFLU_RS00410	0.18	-1.2
82,496	-		PFLU_RS00410	0.18	-1.2
82,496	-		PFLU_RS00410	0.18	-0.9
82,496	-		PFLU_RS00410	0.18	+0.6
82,496	-		PFLU_RS00410	0.18	+2.1
82,496	-		PFLU_RS00410	0.18	+0.6
82,496	-		PFLU_RS00410	0.18	-0.4
82,496	-		PFLU_RS00410	0.18	-1.8
82,496	-		PFLU_RS00410	0.18	+0.1
82,496	-		PFLU_RS00410	0.18	+0.6
82,523	+		PFLU_RS00410	0.22	-1.8
82,524	-		PFLU_RS00410	0.22	-1.2
82,524	-		PFLU_RS00410	0.22	+2.6
82,572	+		PFLU_RS00410	0.30	+2.3
82,680	+		PFLU_RS00410	0.47	+4.5
82,680	+		PFLU_RS00410	0.47	-0.4
82,680	+		PFLU_RS00410	0.47	+0.1
82,681	-		PFLU_RS00410	0.48	-1.8
82,681	-		PFLU_RS00410	0.48	-0.9
82,681	-		PFLU_RS00410	0.48	-0.9
82,681	-		PFLU_RS00410	0.48	+0.6
82,681	-		PFLU_RS00410	0.48	-1.2
82,681	-		PFLU_RS00410	0.48	-0.7
82,820	-		PFLU_RS00410	0.70	+0.1
82,863	+		PFLU_RS00410	0.77	+0.2
82,863	+		PFLU_RS00410	0.77	-1.9
82,863	+		PFLU_RS00410	0.77	-1.7
82,863	+		PFLU_RS00410	0.77	+0.6
82,863	+		PFLU_RS00410	0.77	-0.9
82,863	+		PFLU_RS00410	0.77	+1.4
82,863	+		PFLU_RS00410	0.77	+1.6
82,863	+		PFLU_RS00410	0.77	+2.5
82,863	+		PFLU_RS00410	0.77	-1.4
82,863	+		PFLU_RS00410	0.77	-1.9
82,863	+		PFLU_RS00410	0.77	-1.2
82,863	+		PFLU_RS00410	0.77	+1.6
82,863	+		PFLU_RS00410	0.77	-2.7
82,863	+		PFLU_RS00410	0.77	+0.1
82,864	-		PFLU_RS00410	0.77	+0.1
82,864	-		PFLU_RS00410	0.77	+0.1
82,864	-		PFLU_RS00410	0.77	+0.1
82,864	-		PFLU_RS00410	0.77	-0.4
82,864	-		PFLU_RS00410	0.77	-0.4
82,864	-		PFLU_RS00410	0.77	-1.7
82,864	-		PFLU_RS00410	0.77	-0.7
82,864	-		PFLU_RS00410	0.77	-1.9
82,913	+		PFLU_RS00410	0.85	+2.6
82,914	-		PFLU_RS00410	0.85	+1.6
82,940	+		PFLU_RS00410	0.89	+0.6
82,940	+		PFLU_RS00410	0.89	-1.2
82,940	+		PFLU_RS00410	0.89	-0.9
82,940	+		PFLU_RS00410	0.89	-0.7
82,940	+		PFLU_RS00410	0.89	+0.4
82,940	+		PFLU_RS00410	0.89	-0.4
82,940	+		PFLU_RS00410	0.89	-0.7
82,940	+		PFLU_RS00410	0.89	-1.7
82,941	-		PFLU_RS00410	0.89	-0.4
82,941	-		PFLU_RS00410	0.89	+0.6
82,941	-		PFLU_RS00410	0.89	-0.7
82,941	-		PFLU_RS00410	0.89	-1.4
82,989	+				+0.1
82,989	+				-1.7
82,989	+				+2.2
82,989	+				-0.9
82,989	+				+0.6
82,989	+				+1.6
82,989	+				+0.6
82,989	+				-1.4
82,989	+				-1.2
82,989	+				+0.6
82,989	+				+0.6
82,989	+				+0.1
82,989	+				+0.6
82,989	+				-0.7
82,989	+				-0.7
82,989	+				-1.9
82,989	+				-1.9
82,989	+				-1.7
82,989	+				+1.6
82,989	+				-1.8
82,990	-				+1.6
82,990	-				+1.6
82,990	-				+1.3
82,990	-				-0.4
82,990	-				+0.1
82,990	-				-1.9
82,990	-				-0.7
82,990	-				+0.6
82,990	-				+1.6
82,990	-				+0.6
82,990	-				+1.4
82,990	-				+1.6
82,990	-				+0.6
82,990	-				+0.1
82,990	-				-1.5
82,990	-				-0.4
82,990	-				+0.6
82,990	-				-1.4
82,990	-				+0.1
82,990	-				-1.2
82,990	-				+0.1
82,990	-				+1.6
82,990	-				+0.1
82,990	-				-0.4
82,991	+				+1.6
82,991	+				-0.9
83,007	+				+0.9
83,007	+				-2.2
83,007	+				-0.6
83,007	+				-1.8
83,008	-				+1.4
83,008	-				-2.5
83,008	-				-2.5
83,025	-				+5.2
83,025	-				-2.9
83,025	-				-2.4
83,025	-				-0.0
83,035	+				+1.5
83,036	-				-2.5
83,036	-				+1.3
83,054	+				+0.6
83,055	-				+1.5
83,055	-				-2.5
83,055	-				+1.5
83,055	-				+0.1
83,055	-				+0.7
83,055	-				+1.7
83,068	+				-2.5
83,069	-				-2.1
83,069	-				-1.7
83,069	-				-1.4
83,069	-				-0.9
83,098	+				-2.5
83,099	-				+1.9
83,099	-				-2.2
83,099	-				-0.1
83,104	-				+2.2
83,158	+				-2.2
83,158	+				-1.2
83,158	+				-1.7
83,158	+				+1.5
83,158	+				-0.0
83,158	+				-3.0
83,158	+				+3.2
83,158	+				+0.9
83,158	+				+0.7
83,159	-				+0.4
83,159	-				-1.0
83,159	-				+1.1
83,159	-				-2.3
83,159	-				-1.5
83,159	-				+2.2
83,159	-				-3.2
83,159	-				+1.8
83,159	-				-3.1
83,159	-				-2.4
83,172	+				+1.3
83,172	+				+0.1
83,173	-				+0.6
83,173	-				+1.6
83,173	-				+1.6
83,173	-				-0.7
83,173	-				+0.6
83,274	+		PFLU_RS00415	0.15	-0.9