Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS00185 and PFLU_RS00190 are separated by 11 nucleotides PFLU_RS00190 and PFLU_RS00195 are separated by 154 nucleotides PFLU_RS00195 and PFLU_RS00200 are separated by 115 nucleotides PFLU_RS00200 and PFLU_RS00205 are separated by 151 nucleotides
PFLU_RS00185: PFLU_RS00185 - LysR family transcriptional regulator, at 40,009 to 40,905
_RS00185
PFLU_RS00190: PFLU_RS00190 - DUF883 domain-containing protein, at 40,917 to 41,243
_RS00190
PFLU_RS00195: PFLU_RS00195 - dodecin domain-containing protein, at 41,398 to 41,613
_RS00195
PFLU_RS00200: PFLU_RS00200 - DUF1161 domain-containing protein, at 41,729 to 41,956
_RS00200
PFLU_RS00205: PFLU_RS00205 - LLM class flavin-dependent oxidoreductase, at 42,108 to 43,109
_RS00205
Position (kb) 40
41
42 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 39.947 kb on - strand at 40.032 kb on + strand at 40.071 kb on + strand at 40.314 kb on + strand, within PFLU_RS00185 at 40.445 kb on + strand, within PFLU_RS00185 at 40.445 kb on + strand, within PFLU_RS00185 at 40.445 kb on + strand, within PFLU_RS00185 at 40.483 kb on + strand, within PFLU_RS00185 at 40.483 kb on + strand, within PFLU_RS00185 at 40.483 kb on + strand, within PFLU_RS00185 at 40.483 kb on + strand, within PFLU_RS00185 at 40.483 kb on + strand, within PFLU_RS00185 at 40.483 kb on + strand, within PFLU_RS00185 at 40.483 kb on + strand, within PFLU_RS00185 at 40.483 kb on + strand, within PFLU_RS00185 at 40.483 kb on + strand, within PFLU_RS00185 at 40.483 kb on + strand, within PFLU_RS00185 at 40.483 kb on + strand, within PFLU_RS00185 at 40.483 kb on + strand, within PFLU_RS00185 at 40.484 kb on - strand, within PFLU_RS00185 at 40.484 kb on - strand, within PFLU_RS00185 at 40.484 kb on - strand, within PFLU_RS00185 at 40.484 kb on - strand, within PFLU_RS00185 at 40.484 kb on - strand, within PFLU_RS00185 at 40.484 kb on - strand, within PFLU_RS00185 at 40.484 kb on - strand, within PFLU_RS00185 at 40.484 kb on - strand, within PFLU_RS00185 at 40.484 kb on - strand, within PFLU_RS00185 at 40.484 kb on - strand, within PFLU_RS00185 at 40.484 kb on - strand, within PFLU_RS00185 at 40.484 kb on - strand, within PFLU_RS00185 at 40.484 kb on - strand, within PFLU_RS00185 at 40.484 kb on - strand, within PFLU_RS00185 at 40.484 kb on - strand, within PFLU_RS00185 at 40.484 kb on - strand, within PFLU_RS00185 at 40.484 kb on - strand, within PFLU_RS00185 at 40.484 kb on - strand, within PFLU_RS00185 at 40.484 kb on - strand, within PFLU_RS00185 at 40.484 kb on - strand, within PFLU_RS00185 at 40.484 kb on - strand, within PFLU_RS00185 at 40.484 kb on - strand, within PFLU_RS00185 at 40.484 kb on - strand, within PFLU_RS00185 at 40.528 kb on + strand, within PFLU_RS00185 at 40.528 kb on + strand, within PFLU_RS00185 at 40.529 kb on - strand, within PFLU_RS00185 at 40.529 kb on - strand, within PFLU_RS00185 at 40.529 kb on - strand, within PFLU_RS00185 at 40.586 kb on + strand, within PFLU_RS00185 at 40.587 kb on - strand, within PFLU_RS00185 at 40.687 kb on + strand, within PFLU_RS00185 at 40.687 kb on + strand, within PFLU_RS00185 at 40.687 kb on + strand, within PFLU_RS00185 at 40.688 kb on - strand, within PFLU_RS00185 at 40.688 kb on - strand, within PFLU_RS00185 at 40.688 kb on - strand, within PFLU_RS00185 at 40.690 kb on + strand, within PFLU_RS00185 at 40.690 kb on + strand, within PFLU_RS00185 at 40.775 kb on + strand, within PFLU_RS00185 at 40.776 kb on - strand, within PFLU_RS00185 at 40.776 kb on - strand, within PFLU_RS00185 at 40.904 kb on - strand at 40.911 kb on - strand at 40.942 kb on + strand at 40.942 kb on + strand at 40.942 kb on + strand at 40.942 kb on + strand at 40.942 kb on + strand at 40.942 kb on + strand at 40.942 kb on + strand at 40.942 kb on + strand at 40.942 kb on + strand at 40.942 kb on + strand at 40.942 kb on + strand at 40.942 kb on + strand at 40.942 kb on + strand at 40.943 kb on - strand at 40.943 kb on - strand at 40.943 kb on - strand at 40.943 kb on - strand at 40.943 kb on - strand at 41.008 kb on + strand, within PFLU_RS00190 at 41.008 kb on + strand, within PFLU_RS00190 at 41.009 kb on - strand, within PFLU_RS00190 at 41.059 kb on + strand, within PFLU_RS00190 at 41.238 kb on - strand at 41.277 kb on + strand at 41.277 kb on + strand at 41.277 kb on + strand at 41.277 kb on + strand at 41.277 kb on + strand at 41.277 kb on + strand at 41.277 kb on + strand at 41.277 kb on + strand at 41.277 kb on + strand at 41.277 kb on + strand at 41.277 kb on + strand at 41.277 kb on + strand at 41.277 kb on + strand at 41.277 kb on + strand at 41.278 kb on - strand at 41.278 kb on - strand at 41.278 kb on - strand at 41.278 kb on - strand at 41.278 kb on - strand at 41.278 kb on - strand at 41.278 kb on - strand at 41.278 kb on - strand at 41.278 kb on - strand at 41.278 kb on - strand at 41.278 kb on - strand at 41.278 kb on - strand at 41.278 kb on - strand at 41.278 kb on - strand at 41.278 kb on - strand at 41.278 kb on - strand at 41.278 kb on - strand at 41.278 kb on - strand at 41.278 kb on - strand at 41.278 kb on - strand at 41.281 kb on + strand at 41.281 kb on + strand at 41.281 kb on + strand at 41.281 kb on + strand at 41.311 kb on + strand at 41.311 kb on + strand at 41.312 kb on - strand at 41.312 kb on - strand at 41.312 kb on - strand at 41.329 kb on + strand at 41.329 kb on + strand at 41.330 kb on - strand at 41.352 kb on - strand at 41.367 kb on + strand at 41.367 kb on + strand at 41.367 kb on + strand at 41.367 kb on + strand at 41.367 kb on + strand at 41.368 kb on - strand at 41.368 kb on - strand at 41.368 kb on - strand at 41.368 kb on - strand at 41.368 kb on - strand at 41.368 kb on - strand at 41.368 kb on - strand at 41.368 kb on - strand at 41.376 kb on + strand at 41.376 kb on + strand at 41.376 kb on + strand at 41.376 kb on + strand at 41.376 kb on + strand at 41.377 kb on - strand at 41.377 kb on - strand at 41.377 kb on - strand at 41.377 kb on - strand at 41.416 kb on + strand at 41.416 kb on + strand at 41.416 kb on + strand at 41.416 kb on + strand at 41.416 kb on + strand at 41.417 kb on - strand at 41.417 kb on - strand at 41.417 kb on - strand at 41.417 kb on - strand at 41.417 kb on - strand at 41.569 kb on + strand, within PFLU_RS00195 at 41.570 kb on - strand, within PFLU_RS00195 at 41.570 kb on - strand, within PFLU_RS00195 at 41.570 kb on - strand, within PFLU_RS00195 at 41.607 kb on + strand at 41.607 kb on + strand at 41.607 kb on + strand at 41.607 kb on + strand at 41.607 kb on + strand at 41.608 kb on - strand at 41.608 kb on - strand at 41.608 kb on - strand at 41.608 kb on - strand at 41.660 kb on + strand at 41.661 kb on - strand at 41.661 kb on - strand at 41.661 kb on - strand at 41.723 kb on + strand at 41.724 kb on - strand at 41.724 kb on - strand at 41.724 kb on - strand at 41.751 kb on + strand at 41.752 kb on - strand, within PFLU_RS00200 at 41.752 kb on - strand, within PFLU_RS00200 at 41.752 kb on - strand, within PFLU_RS00200 at 41.752 kb on - strand, within PFLU_RS00200 at 41.897 kb on + strand, within PFLU_RS00200 at 41.897 kb on + strand, within PFLU_RS00200 at 41.897 kb on + strand, within PFLU_RS00200 at 41.897 kb on + strand, within PFLU_RS00200 at 41.897 kb on + strand, within PFLU_RS00200 at 41.897 kb on + strand, within PFLU_RS00200 at 41.897 kb on + strand, within PFLU_RS00200 at 41.897 kb on + strand, within PFLU_RS00200 at 41.898 kb on - strand, within PFLU_RS00200 at 41.898 kb on - strand, within PFLU_RS00200 at 41.898 kb on - strand, within PFLU_RS00200 at 41.942 kb on + strand at 41.943 kb on - strand at 41.943 kb on - strand at 41.943 kb on - strand at 41.984 kb on + strand at 41.984 kb on + strand at 41.985 kb on - strand at 41.985 kb on - strand at 41.985 kb on - strand at 41.985 kb on - strand at 41.985 kb on - strand at 41.985 kb on - strand at 41.985 kb on - strand at 41.985 kb on - strand at 42.109 kb on + strand at 42.120 kb on + strand at 42.120 kb on + strand at 42.120 kb on + strand at 42.120 kb on + strand at 42.120 kb on + strand at 42.120 kb on + strand at 42.121 kb on - strand at 42.121 kb on - strand at 42.121 kb on - strand at 42.121 kb on - strand at 42.121 kb on - strand at 42.139 kb on + strand at 42.139 kb on + strand at 42.139 kb on + strand at 42.139 kb on + strand at 42.140 kb on - strand at 42.166 kb on + strand at 42.166 kb on + strand at 42.167 kb on - strand at 42.167 kb on - strand at 42.180 kb on - strand at 42.180 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs remove 39,947 - -2.8 40,032 + -2.6 40,071 + -2.5 40,314 + PFLU_RS00185 0.34 +0.9 40,445 + PFLU_RS00185 0.49 +0.9 40,445 + PFLU_RS00185 0.49 -1.0 40,445 + PFLU_RS00185 0.49 -2.8 40,483 + PFLU_RS00185 0.53 -3.2 40,483 + PFLU_RS00185 0.53 +1.4 40,483 + PFLU_RS00185 0.53 +0.1 40,483 + PFLU_RS00185 0.53 +1.0 40,483 + PFLU_RS00185 0.53 +1.7 40,483 + PFLU_RS00185 0.53 -1.2 40,483 + PFLU_RS00185 0.53 -3.4 40,483 + PFLU_RS00185 0.53 -0.2 40,483 + PFLU_RS00185 0.53 +1.2 40,483 + PFLU_RS00185 0.53 -2.5 40,483 + PFLU_RS00185 0.53 +1.5 40,483 + PFLU_RS00185 0.53 +0.9 40,484 - PFLU_RS00185 0.53 -0.8 40,484 - PFLU_RS00185 0.53 -1.2 40,484 - PFLU_RS00185 0.53 +0.7 40,484 - PFLU_RS00185 0.53 -0.5 40,484 - PFLU_RS00185 0.53 -2.5 40,484 - PFLU_RS00185 0.53 -2.7 40,484 - PFLU_RS00185 0.53 -0.1 40,484 - PFLU_RS00185 0.53 +1.0 40,484 - PFLU_RS00185 0.53 +1.5 40,484 - PFLU_RS00185 0.53 +1.4 40,484 - PFLU_RS00185 0.53 -2.2 40,484 - PFLU_RS00185 0.53 -2.1 40,484 - PFLU_RS00185 0.53 +1.6 40,484 - PFLU_RS00185 0.53 +2.6 40,484 - PFLU_RS00185 0.53 +1.3 40,484 - PFLU_RS00185 0.53 +1.5 40,484 - PFLU_RS00185 0.53 +2.0 40,484 - PFLU_RS00185 0.53 -2.5 40,484 - PFLU_RS00185 0.53 +2.4 40,484 - PFLU_RS00185 0.53 -1.7 40,484 - PFLU_RS00185 0.53 -2.8 40,484 - PFLU_RS00185 0.53 +1.5 40,484 - PFLU_RS00185 0.53 -2.7 40,528 + PFLU_RS00185 0.58 +1.1 40,528 + PFLU_RS00185 0.58 +0.9 40,529 - PFLU_RS00185 0.58 +1.1 40,529 - PFLU_RS00185 0.58 -1.8 40,529 - PFLU_RS00185 0.58 +1.7 40,586 + PFLU_RS00185 0.64 +0.6 40,587 - PFLU_RS00185 0.64 -3.7 40,687 + PFLU_RS00185 0.76 +1.4 40,687 + PFLU_RS00185 0.76 +0.5 40,687 + PFLU_RS00185 0.76 +1.4 40,688 - PFLU_RS00185 0.76 +0.6 40,688 - PFLU_RS00185 0.76 -0.5 40,688 - PFLU_RS00185 0.76 -2.9 40,690 + PFLU_RS00185 0.76 -0.5 40,690 + PFLU_RS00185 0.76 -1.2 40,775 + PFLU_RS00185 0.85 +3.6 40,776 - PFLU_RS00185 0.86 +1.2 40,776 - PFLU_RS00185 0.86 -3.3 40,904 - -3.5 40,911 - -1.2 40,942 + -0.1 40,942 + -0.5 40,942 + -0.9 40,942 + +0.2 40,942 + +0.3 40,942 + -3.0 40,942 + +0.8 40,942 + +1.5 40,942 + +0.1 40,942 + -2.7 40,942 + -1.4 40,942 + -1.1 40,942 + +0.6 40,943 - -0.7 40,943 - -0.9 40,943 - -1.5 40,943 - -1.3 40,943 - -0.5 41,008 + PFLU_RS00190 0.28 -2.8 41,008 + PFLU_RS00190 0.28 -3.2 41,009 - PFLU_RS00190 0.28 -2.0 41,059 + PFLU_RS00190 0.43 -2.7 41,238 - -4.3 41,277 + -2.3 41,277 + +1.9 41,277 + -1.4 41,277 + -0.2 41,277 + +0.6 41,277 + +0.3 41,277 + -0.5 41,277 + +1.1 41,277 + +1.0 41,277 + +0.5 41,277 + -1.9 41,277 + -3.7 41,277 + -2.5 41,277 + -3.2 41,278 - -3.5 41,278 - +0.9 41,278 - +1.8 41,278 - +1.4 41,278 - -1.0 41,278 - -1.9 41,278 - -3.7 41,278 - -1.7 41,278 - -1.4 41,278 - +0.8 41,278 - -0.1 41,278 - +2.3 41,278 - -1.7 41,278 - -0.5 41,278 - +1.5 41,278 - +0.4 41,278 - +0.9 41,278 - +0.1 41,278 - -2.9 41,278 - +0.7 41,281 + -0.9 41,281 + +1.2 41,281 + +1.4 41,281 + -1.3 41,311 + -3.4 41,311 + +0.3 41,312 - -2.2 41,312 - -1.2 41,312 - -2.5 41,329 + -3.3 41,329 + -3.5 41,330 - +0.2 41,352 - +1.5 41,367 + +1.6 41,367 + +0.5 41,367 + -2.2 41,367 + +2.2 41,367 + -0.7 41,368 - +0.6 41,368 - -2.5 41,368 - -2.8 41,368 - -2.9 41,368 - -0.4 41,368 - +0.3 41,368 - +1.1 41,368 - -0.2 41,376 + -0.1 41,376 + -2.6 41,376 + +0.1 41,376 + -1.2 41,376 + +1.3 41,377 - +0.5 41,377 - +0.7 41,377 - -0.7 41,377 - -1.2 41,416 + -0.4 41,416 + +1.1 41,416 + +1.6 41,416 + -0.4 41,416 + -2.9 41,417 - -0.0 41,417 - +0.5 41,417 - +2.1 41,417 - -0.3 41,417 - -0.4 41,569 + PFLU_RS00195 0.79 -3.5 41,570 - PFLU_RS00195 0.80 +3.4 41,570 - PFLU_RS00195 0.80 +1.2 41,570 - PFLU_RS00195 0.80 +1.4 41,607 + +0.2 41,607 + -2.3 41,607 + -2.1 41,607 + -1.2 41,607 + +0.4 41,608 - -1.2 41,608 - -1.8 41,608 - -0.0 41,608 - -1.5 41,660 + +1.6 41,661 - -1.5 41,661 - +0.8 41,661 - -3.4 41,723 + -0.9 41,724 - +1.6 41,724 - +2.8 41,724 - -3.1 41,751 + +0.3 41,752 - PFLU_RS00200 0.10 -0.0 41,752 - PFLU_RS00200 0.10 -2.4 41,752 - PFLU_RS00200 0.10 +1.4 41,752 - PFLU_RS00200 0.10 +2.1 41,897 + PFLU_RS00200 0.74 -3.2 41,897 + PFLU_RS00200 0.74 -1.6 41,897 + PFLU_RS00200 0.74 -1.5 41,897 + PFLU_RS00200 0.74 -0.0 41,897 + PFLU_RS00200 0.74 -0.2 41,897 + PFLU_RS00200 0.74 +0.2 41,897 + PFLU_RS00200 0.74 -2.3 41,897 + PFLU_RS00200 0.74 +1.5 41,898 - PFLU_RS00200 0.74 -0.4 41,898 - PFLU_RS00200 0.74 +1.2 41,898 - PFLU_RS00200 0.74 -2.3 41,942 + +1.3 41,943 - +0.2 41,943 - +1.4 41,943 - +1.8 41,984 + +0.0 41,984 + +1.1 41,985 - +3.6 41,985 - -1.4 41,985 - -0.1 41,985 - -1.2 41,985 - +0.6 41,985 - -1.4 41,985 - +0.7 41,985 - -1.9 42,109 + -0.9 42,120 + -0.1 42,120 + +0.6 42,120 + -1.2 42,120 + -0.6 42,120 + +0.1 42,120 + +0.3 42,121 - -0.2 42,121 - +2.1 42,121 - -0.0 42,121 - +0.1 42,121 - -2.1 42,139 + -0.5 42,139 + +0.4 42,139 + -1.1 42,139 + -0.4 42,140 - +0.3 42,166 + -0.2 42,166 + +1.6 42,167 - +0.8 42,167 - -2.9 42,180 - +0.6 42,180 - +0.1
Or see this region's nucleotide sequence