Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS00075 and PFLU_RS00080 are separated by 22 nucleotides PFLU_RS00080 and PFLU_RS00085 overlap by 4 nucleotides
PFLU_RS00075: PFLU_RS00075 - Trk system potassium transporter TrkA, at 17,258 to 18,631
_RS00075
PFLU_RS00080: PFLU_RS00080 - 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB, at 18,654 to 19,964
_RS00080
PFLU_RS00085: PFLU_RS00085 - methionyl-tRNA formyltransferase, at 19,961 to 20,914
_RS00085
Position (kb) 18
19
20 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 17.737 kb on + strand, within PFLU_RS00075 at 17.798 kb on + strand, within PFLU_RS00075 at 17.799 kb on - strand, within PFLU_RS00075 at 17.799 kb on - strand, within PFLU_RS00075 at 17.825 kb on + strand, within PFLU_RS00075 at 17.825 kb on + strand, within PFLU_RS00075 at 17.826 kb on - strand, within PFLU_RS00075 at 17.826 kb on - strand, within PFLU_RS00075 at 17.871 kb on + strand, within PFLU_RS00075 at 17.940 kb on + strand, within PFLU_RS00075 at 17.940 kb on + strand, within PFLU_RS00075 at 17.940 kb on + strand, within PFLU_RS00075 at 17.940 kb on + strand, within PFLU_RS00075 at 17.940 kb on + strand, within PFLU_RS00075 at 17.940 kb on + strand, within PFLU_RS00075 at 17.940 kb on + strand, within PFLU_RS00075 at 17.940 kb on + strand, within PFLU_RS00075 at 17.940 kb on + strand, within PFLU_RS00075 at 17.940 kb on + strand, within PFLU_RS00075 at 17.941 kb on - strand, within PFLU_RS00075 at 17.941 kb on - strand, within PFLU_RS00075 at 18.122 kb on + strand, within PFLU_RS00075 at 18.122 kb on + strand, within PFLU_RS00075 at 18.122 kb on + strand, within PFLU_RS00075 at 18.123 kb on - strand, within PFLU_RS00075 at 18.123 kb on - strand, within PFLU_RS00075 at 18.123 kb on - strand, within PFLU_RS00075 at 18.150 kb on + strand, within PFLU_RS00075 at 18.153 kb on + strand, within PFLU_RS00075 at 18.153 kb on + strand, within PFLU_RS00075 at 18.153 kb on + strand, within PFLU_RS00075 at 18.154 kb on - strand, within PFLU_RS00075 at 18.154 kb on - strand, within PFLU_RS00075 at 18.154 kb on - strand, within PFLU_RS00075 at 18.154 kb on - strand, within PFLU_RS00075 at 18.240 kb on + strand, within PFLU_RS00075 at 18.240 kb on + strand, within PFLU_RS00075 at 18.240 kb on + strand, within PFLU_RS00075 at 18.240 kb on + strand, within PFLU_RS00075 at 18.240 kb on + strand, within PFLU_RS00075 at 18.240 kb on + strand, within PFLU_RS00075 at 18.240 kb on + strand, within PFLU_RS00075 at 18.240 kb on + strand, within PFLU_RS00075 at 18.240 kb on + strand, within PFLU_RS00075 at 18.240 kb on + strand, within PFLU_RS00075 at 18.240 kb on + strand, within PFLU_RS00075 at 18.240 kb on + strand, within PFLU_RS00075 at 18.240 kb on + strand, within PFLU_RS00075 at 18.241 kb on - strand, within PFLU_RS00075 at 18.241 kb on - strand, within PFLU_RS00075 at 18.241 kb on - strand, within PFLU_RS00075 at 18.241 kb on - strand, within PFLU_RS00075 at 18.241 kb on - strand, within PFLU_RS00075 at 18.241 kb on - strand, within PFLU_RS00075 at 18.322 kb on - strand, within PFLU_RS00075 at 18.645 kb on + strand at 18.645 kb on + strand at 18.645 kb on + strand at 18.646 kb on - strand at 18.646 kb on - strand at 18.691 kb on + strand at 18.694 kb on + strand at 18.694 kb on + strand at 18.694 kb on + strand at 18.694 kb on + strand at 18.694 kb on + strand at 18.694 kb on + strand at 18.694 kb on + strand at 18.694 kb on + strand at 18.695 kb on - strand at 18.695 kb on - strand at 18.695 kb on - strand at 18.695 kb on - strand at 18.695 kb on - strand at 18.695 kb on - strand at 18.695 kb on - strand at 18.794 kb on + strand, within PFLU_RS00080 at 18.856 kb on + strand, within PFLU_RS00080 at 19.344 kb on + strand, within PFLU_RS00080 at 19.345 kb on - strand, within PFLU_RS00080 at 19.364 kb on - strand, within PFLU_RS00080 at 19.364 kb on - strand, within PFLU_RS00080 at 19.364 kb on - strand, within PFLU_RS00080 at 19.364 kb on - strand, within PFLU_RS00080 at 19.411 kb on + strand, within PFLU_RS00080 at 19.412 kb on - strand, within PFLU_RS00080 at 19.412 kb on - strand, within PFLU_RS00080 at 19.614 kb on + strand, within PFLU_RS00080 at 19.614 kb on + strand, within PFLU_RS00080 at 19.708 kb on + strand, within PFLU_RS00080 at 19.708 kb on + strand, within PFLU_RS00080 at 19.708 kb on + strand, within PFLU_RS00080 at 19.708 kb on + strand, within PFLU_RS00080 at 19.708 kb on + strand, within PFLU_RS00080 at 19.708 kb on + strand, within PFLU_RS00080 at 19.709 kb on - strand, within PFLU_RS00080 at 19.709 kb on - strand, within PFLU_RS00080 at 19.709 kb on - strand, within PFLU_RS00080 at 19.709 kb on - strand, within PFLU_RS00080 at 19.709 kb on - strand, within PFLU_RS00080 at 19.720 kb on + strand, within PFLU_RS00080 at 19.720 kb on + strand, within PFLU_RS00080 at 19.721 kb on - strand, within PFLU_RS00080 at 19.721 kb on - strand, within PFLU_RS00080
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs remove 17,737 + PFLU_RS00075 0.35 -0.4 17,798 + PFLU_RS00075 0.39 +0.8 17,799 - PFLU_RS00075 0.39 +0.5 17,799 - PFLU_RS00075 0.39 +0.8 17,825 + PFLU_RS00075 0.41 -2.3 17,825 + PFLU_RS00075 0.41 +0.6 17,826 - PFLU_RS00075 0.41 -0.9 17,826 - PFLU_RS00075 0.41 -1.2 17,871 + PFLU_RS00075 0.45 -1.2 17,940 + PFLU_RS00075 0.50 -1.9 17,940 + PFLU_RS00075 0.50 -0.9 17,940 + PFLU_RS00075 0.50 +1.6 17,940 + PFLU_RS00075 0.50 -1.5 17,940 + PFLU_RS00075 0.50 +1.6 17,940 + PFLU_RS00075 0.50 +1.0 17,940 + PFLU_RS00075 0.50 +2.1 17,940 + PFLU_RS00075 0.50 -1.8 17,940 + PFLU_RS00075 0.50 -1.4 17,940 + PFLU_RS00075 0.50 -2.3 17,941 - PFLU_RS00075 0.50 +0.1 17,941 - PFLU_RS00075 0.50 -2.2 18,122 + PFLU_RS00075 0.63 -0.9 18,122 + PFLU_RS00075 0.63 -1.4 18,122 + PFLU_RS00075 0.63 +0.1 18,123 - PFLU_RS00075 0.63 +1.6 18,123 - PFLU_RS00075 0.63 +0.1 18,123 - PFLU_RS00075 0.63 -0.1 18,150 + PFLU_RS00075 0.65 +4.1 18,153 + PFLU_RS00075 0.65 -2.1 18,153 + PFLU_RS00075 0.65 +1.2 18,153 + PFLU_RS00075 0.65 -2.1 18,154 - PFLU_RS00075 0.65 -0.7 18,154 - PFLU_RS00075 0.65 +1.4 18,154 - PFLU_RS00075 0.65 -0.4 18,154 - PFLU_RS00075 0.65 -1.1 18,240 + PFLU_RS00075 0.71 -0.9 18,240 + PFLU_RS00075 0.71 +0.1 18,240 + PFLU_RS00075 0.71 -3.5 18,240 + PFLU_RS00075 0.71 +0.4 18,240 + PFLU_RS00075 0.71 +0.3 18,240 + PFLU_RS00075 0.71 -0.7 18,240 + PFLU_RS00075 0.71 +2.3 18,240 + PFLU_RS00075 0.71 -1.7 18,240 + PFLU_RS00075 0.71 -0.1 18,240 + PFLU_RS00075 0.71 +2.9 18,240 + PFLU_RS00075 0.71 -0.4 18,240 + PFLU_RS00075 0.71 +0.6 18,240 + PFLU_RS00075 0.71 +2.6 18,241 - PFLU_RS00075 0.72 -1.8 18,241 - PFLU_RS00075 0.72 +1.0 18,241 - PFLU_RS00075 0.72 -1.5 18,241 - PFLU_RS00075 0.72 -0.1 18,241 - PFLU_RS00075 0.72 -1.7 18,241 - PFLU_RS00075 0.72 +0.1 18,322 - PFLU_RS00075 0.77 -0.4 18,645 + +0.3 18,645 + +1.5 18,645 + -0.2 18,646 - +0.0 18,646 - -0.2 18,691 + -2.5 18,694 + -2.2 18,694 + -2.5 18,694 + -2.8 18,694 + -2.7 18,694 + +1.0 18,694 + -0.4 18,694 + -3.2 18,694 + +1.9 18,695 - -1.2 18,695 - -1.0 18,695 - -0.9 18,695 - +1.0 18,695 - -0.9 18,695 - -3.2 18,695 - -0.9 18,794 + PFLU_RS00080 0.11 -1.8 18,856 + PFLU_RS00080 0.15 +0.4 19,344 + PFLU_RS00080 0.53 -2.8 19,345 - PFLU_RS00080 0.53 +1.0 19,364 - PFLU_RS00080 0.54 -2.6 19,364 - PFLU_RS00080 0.54 -1.9 19,364 - PFLU_RS00080 0.54 -3.3 19,364 - PFLU_RS00080 0.54 -0.0 19,411 + PFLU_RS00080 0.58 -2.5 19,412 - PFLU_RS00080 0.58 -0.7 19,412 - PFLU_RS00080 0.58 -2.1 19,614 + PFLU_RS00080 0.73 -0.8 19,614 + PFLU_RS00080 0.73 -2.1 19,708 + PFLU_RS00080 0.80 -2.3 19,708 + PFLU_RS00080 0.80 -0.7 19,708 + PFLU_RS00080 0.80 +0.1 19,708 + PFLU_RS00080 0.80 -2.6 19,708 + PFLU_RS00080 0.80 -1.2 19,708 + PFLU_RS00080 0.80 -0.9 19,709 - PFLU_RS00080 0.80 -1.9 19,709 - PFLU_RS00080 0.80 -0.7 19,709 - PFLU_RS00080 0.80 -1.5 19,709 - PFLU_RS00080 0.80 -2.4 19,709 - PFLU_RS00080 0.80 +0.1 19,720 + PFLU_RS00080 0.81 -0.7 19,720 + PFLU_RS00080 0.81 +1.6 19,721 - PFLU_RS00080 0.81 -2.1 19,721 - PFLU_RS00080 0.81 -0.5
Or see this region's nucleotide sequence