Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06157

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06154 and H281DRAFT_06155 are separated by 2 nucleotidesH281DRAFT_06155 and H281DRAFT_06156 overlap by 50 nucleotidesH281DRAFT_06156 and H281DRAFT_06157 are separated by 79 nucleotidesH281DRAFT_06157 and H281DRAFT_06158 are separated by 2 nucleotides H281DRAFT_06154: H281DRAFT_06154 - hypothetical protein, at 48,265 to 48,738 _06154 H281DRAFT_06155: H281DRAFT_06155 - hypothetical protein, at 48,741 to 48,860 _06155 H281DRAFT_06156: H281DRAFT_06156 - hypothetical protein, at 48,811 to 49,359 _06156 H281DRAFT_06157: H281DRAFT_06157 - hypothetical protein, at 49,439 to 50,140 _06157 H281DRAFT_06158: H281DRAFT_06158 - type IV secretion system protein VirB4, at 50,143 to 51,936 _06158 Position (kb) 49 50 51Strain fitness (log2 ratio) -2 -1 0 1at 48.443 kb on + strand, within H281DRAFT_06154at 48.443 kb on + strand, within H281DRAFT_06154at 48.444 kb on - strand, within H281DRAFT_06154at 48.444 kb on - strand, within H281DRAFT_06154at 48.454 kb on - strand, within H281DRAFT_06154at 48.517 kb on - strand, within H281DRAFT_06154at 48.584 kb on + strand, within H281DRAFT_06154at 48.584 kb on + strand, within H281DRAFT_06154at 48.584 kb on + strand, within H281DRAFT_06154at 48.663 kb on + strand, within H281DRAFT_06154at 48.663 kb on + strand, within H281DRAFT_06154at 48.664 kb on - strand, within H281DRAFT_06154at 48.664 kb on - strand, within H281DRAFT_06154at 48.698 kb on + strandat 48.698 kb on + strandat 48.736 kb on + strandat 48.736 kb on + strandat 48.737 kb on - strandat 48.740 kb on + strandat 48.740 kb on + strandat 48.741 kb on - strandat 48.869 kb on + strandat 48.870 kb on - strand, within H281DRAFT_06156at 48.941 kb on + strand, within H281DRAFT_06156at 48.942 kb on - strand, within H281DRAFT_06156at 48.951 kb on + strand, within H281DRAFT_06156at 48.951 kb on + strand, within H281DRAFT_06156at 48.951 kb on + strand, within H281DRAFT_06156at 48.952 kb on - strand, within H281DRAFT_06156at 49.290 kb on - strand, within H281DRAFT_06156at 49.442 kb on + strandat 49.442 kb on + strandat 49.443 kb on - strandat 49.443 kb on - strandat 49.443 kb on - strandat 49.443 kb on - strandat 49.587 kb on - strand, within H281DRAFT_06157at 49.587 kb on - strand, within H281DRAFT_06157at 50.098 kb on - strandat 50.098 kb on - strandat 50.285 kb on + strandat 50.338 kb on - strand, within H281DRAFT_06158at 50.380 kb on + strand, within H281DRAFT_06158at 50.381 kb on - strand, within H281DRAFT_06158at 50.423 kb on - strand, within H281DRAFT_06158at 50.501 kb on + strand, within H281DRAFT_06158at 50.597 kb on + strand, within H281DRAFT_06158at 50.598 kb on - strand, within H281DRAFT_06158at 50.610 kb on + strand, within H281DRAFT_06158at 50.634 kb on - strand, within H281DRAFT_06158at 51.128 kb on + strand, within H281DRAFT_06158

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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48,443 + H281DRAFT_06154 0.38 +0.1
48,443 + H281DRAFT_06154 0.38 -0.6
48,444 - H281DRAFT_06154 0.38 -2.0
48,444 - H281DRAFT_06154 0.38 -0.1
48,454 - H281DRAFT_06154 0.40 +0.5
48,517 - H281DRAFT_06154 0.53 -0.2
48,584 + H281DRAFT_06154 0.67 -0.4
48,584 + H281DRAFT_06154 0.67 +0.3
48,584 + H281DRAFT_06154 0.67 +0.4
48,663 + H281DRAFT_06154 0.84 +0.4
48,663 + H281DRAFT_06154 0.84 -0.5
48,664 - H281DRAFT_06154 0.84 -0.2
48,664 - H281DRAFT_06154 0.84 +0.2
48,698 + -0.4
48,698 + +0.6
48,736 + +0.2
48,736 + -0.1
48,737 - +0.5
48,740 + +0.9
48,740 + -0.0
48,741 - +0.0
48,869 + +0.7
48,870 - H281DRAFT_06156 0.11 +0.5
48,941 + H281DRAFT_06156 0.24 +0.1
48,942 - H281DRAFT_06156 0.24 +0.2
48,951 + H281DRAFT_06156 0.26 +0.6
48,951 + H281DRAFT_06156 0.26 -0.1
48,951 + H281DRAFT_06156 0.26 -0.1
48,952 - H281DRAFT_06156 0.26 +1.2
49,290 - H281DRAFT_06156 0.87 +0.1
49,442 + -0.1
49,442 + -0.3
49,443 - +0.2
49,443 - +0.8
49,443 - +0.9
49,443 - +0.7
49,587 - H281DRAFT_06157 0.21 +0.4
49,587 - H281DRAFT_06157 0.21 +0.9
50,098 - +0.0
50,098 - +0.2
50,285 + +0.0
50,338 - H281DRAFT_06158 0.11 -0.6
50,380 + H281DRAFT_06158 0.13 -0.7
50,381 - H281DRAFT_06158 0.13 -0.1
50,423 - H281DRAFT_06158 0.16 +0.1
50,501 + H281DRAFT_06158 0.20 +0.6
50,597 + H281DRAFT_06158 0.25 +0.2
50,598 - H281DRAFT_06158 0.25 -0.0
50,610 + H281DRAFT_06158 0.26 -0.0
50,634 - H281DRAFT_06158 0.27 +1.4
51,128 + H281DRAFT_06158 0.55 -1.1

Or see this region's nucleotide sequence