Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06015 and H281DRAFT_06016 are separated by 85 nucleotides H281DRAFT_06016 and H281DRAFT_06017 overlap by 4 nucleotides H281DRAFT_06017 and H281DRAFT_06018 are separated by 287 nucleotides
H281DRAFT_06015: H281DRAFT_06015 - 1-deoxy-D-xylulose-5-phosphate synthase, at 18,000 to 19,907
_06015
H281DRAFT_06016: H281DRAFT_06016 - farnesyl-diphosphate synthase, at 19,993 to 20,874
_06016
H281DRAFT_06017: H281DRAFT_06017 - Exodeoxyribonuclease VII small subunit, at 20,871 to 21,179
_06017
H281DRAFT_06018: H281DRAFT_06018 - choline monooxygenase, at 21,467 to 22,573
_06018
Position (kb) 20
21
22 Strain fitness (log2 ratio) -1
0
1
2 at 19.922 kb on - strand at 19.949 kb on - strand at 19.949 kb on - strand at 19.949 kb on - strand at 19.949 kb on - strand at 19.949 kb on - strand at 20.136 kb on - strand at 20.573 kb on - strand, within H281DRAFT_06016 at 20.875 kb on - strand at 20.875 kb on - strand at 20.875 kb on - strand at 20.875 kb on - strand at 21.104 kb on - strand, within H281DRAFT_06017 at 21.184 kb on - strand at 21.363 kb on + strand at 21.363 kb on + strand at 21.363 kb on + strand at 21.390 kb on + strand at 21.391 kb on - strand at 21.393 kb on - strand at 21.549 kb on + strand at 21.550 kb on - strand at 21.590 kb on + strand, within H281DRAFT_06018 at 21.630 kb on - strand, within H281DRAFT_06018 at 21.630 kb on - strand, within H281DRAFT_06018 at 21.761 kb on - strand, within H281DRAFT_06018 at 21.761 kb on - strand, within H281DRAFT_06018 at 21.788 kb on + strand, within H281DRAFT_06018 at 21.788 kb on + strand, within H281DRAFT_06018 at 21.789 kb on - strand, within H281DRAFT_06018 at 21.789 kb on - strand, within H281DRAFT_06018 at 21.789 kb on - strand, within H281DRAFT_06018 at 21.999 kb on - strand, within H281DRAFT_06018 at 21.999 kb on - strand, within H281DRAFT_06018 at 21.999 kb on - strand, within H281DRAFT_06018 at 21.999 kb on - strand, within H281DRAFT_06018 at 22.025 kb on + strand, within H281DRAFT_06018 at 22.026 kb on - strand, within H281DRAFT_06018 at 22.037 kb on + strand, within H281DRAFT_06018 at 22.038 kb on - strand, within H281DRAFT_06018 at 22.116 kb on - strand, within H281DRAFT_06018 at 22.116 kb on - strand, within H281DRAFT_06018 at 22.172 kb on + strand, within H281DRAFT_06018
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 19,922 - +0.1 19,949 - -0.3 19,949 - +0.1 19,949 - -0.3 19,949 - -0.4 19,949 - +0.2 20,136 - +1.1 20,573 - H281DRAFT_06016 0.66 +0.1 20,875 - +0.5 20,875 - +0.4 20,875 - +0.0 20,875 - +0.5 21,104 - H281DRAFT_06017 0.75 +0.7 21,184 - +1.1 21,363 + -0.2 21,363 + +2.3 21,363 + +0.1 21,390 + -0.2 21,391 - +0.2 21,393 - -0.3 21,549 + +0.8 21,550 - +1.0 21,590 + H281DRAFT_06018 0.11 -0.7 21,630 - H281DRAFT_06018 0.15 -0.4 21,630 - H281DRAFT_06018 0.15 +0.6 21,761 - H281DRAFT_06018 0.27 -0.6 21,761 - H281DRAFT_06018 0.27 -0.1 21,788 + H281DRAFT_06018 0.29 +0.3 21,788 + H281DRAFT_06018 0.29 +0.4 21,789 - H281DRAFT_06018 0.29 -0.0 21,789 - H281DRAFT_06018 0.29 +0.3 21,789 - H281DRAFT_06018 0.29 -1.3 21,999 - H281DRAFT_06018 0.48 +0.3 21,999 - H281DRAFT_06018 0.48 +1.5 21,999 - H281DRAFT_06018 0.48 +0.9 21,999 - H281DRAFT_06018 0.48 -1.4 22,025 + H281DRAFT_06018 0.50 -0.2 22,026 - H281DRAFT_06018 0.50 +0.0 22,037 + H281DRAFT_06018 0.51 -0.5 22,038 - H281DRAFT_06018 0.52 +0.9 22,116 - H281DRAFT_06018 0.59 +0.2 22,116 - H281DRAFT_06018 0.59 -0.1 22,172 + H281DRAFT_06018 0.64 +0.2
Or see this region's nucleotide sequence