Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05889 and H281DRAFT_05890 overlap by 4 nucleotides H281DRAFT_05890 and H281DRAFT_05891 overlap by 4 nucleotides H281DRAFT_05891 and H281DRAFT_05892 are separated by 66 nucleotides
H281DRAFT_05889: H281DRAFT_05889 - hypothetical protein, at 27,223 to 27,417
_05889
H281DRAFT_05890: H281DRAFT_05890 - carbohydrate ABC transporter membrane protein 2, CUT1 family, at 27,414 to 28,367
_05890
H281DRAFT_05891: H281DRAFT_05891 - carbohydrate ABC transporter membrane protein 1, CUT1 family, at 28,364 to 29,320
_05891
H281DRAFT_05892: H281DRAFT_05892 - carbohydrate ABC transporter substrate-binding protein, CUT1 family, at 29,387 to 30,718
_05892
Position (kb) 28
29
30 Strain fitness (log2 ratio) -1
0
1
2 at 27.720 kb on + strand, within H281DRAFT_05890 at 27.829 kb on + strand, within H281DRAFT_05890 at 27.964 kb on + strand, within H281DRAFT_05890 at 27.988 kb on - strand, within H281DRAFT_05890 at 28.172 kb on - strand, within H281DRAFT_05890 at 28.286 kb on - strand at 28.685 kb on - strand, within H281DRAFT_05891 at 28.732 kb on - strand, within H281DRAFT_05891 at 28.750 kb on + strand, within H281DRAFT_05891 at 28.751 kb on - strand, within H281DRAFT_05891 at 28.995 kb on - strand, within H281DRAFT_05891 at 29.479 kb on - strand at 29.691 kb on + strand, within H281DRAFT_05892 at 30.030 kb on + strand, within H281DRAFT_05892 at 30.048 kb on + strand, within H281DRAFT_05892
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 27,720 + H281DRAFT_05890 0.32 -0.9 27,829 + H281DRAFT_05890 0.44 -0.6 27,964 + H281DRAFT_05890 0.58 +0.5 27,988 - H281DRAFT_05890 0.60 +0.5 28,172 - H281DRAFT_05890 0.79 +0.2 28,286 - +0.7 28,685 - H281DRAFT_05891 0.34 +0.6 28,732 - H281DRAFT_05891 0.38 +0.1 28,750 + H281DRAFT_05891 0.40 +1.0 28,751 - H281DRAFT_05891 0.40 +0.0 28,995 - H281DRAFT_05891 0.66 +0.6 29,479 - -0.1 29,691 + H281DRAFT_05892 0.23 +0.1 30,030 + H281DRAFT_05892 0.48 +2.2 30,048 + H281DRAFT_05892 0.50 +0.9
Or see this region's nucleotide sequence